Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181797g00003 ATGACGACCAACGTTTCAGAGTGCATCAATGGCGTGCTTAAGGGCACACGTCGACTCCCTGTTGCTGCCACCATGAGAGCGACGTATGAGAGGTTGCAACAATTGTTTATTAGGAAGGGGTGGGAGGCGATGGCACAACTCAATGCAGGGCAGCAGTGGTCGCAGCATCTTATACAGGCAGAGGTATTTACAGTCGACGAGCTTGAGGAGACGGAATCGACAGATGTCAACACTGCGCACAACTGGCTTCCTATGGGCCTTGCCACGCCCATGCCCACAGCCGCGCCCACGGCCACGCCCTTCCGCTTGTTCTCCACCACCTACGTCCATACTGATACTCTAAAAGAGCATGAGATTGCTGGAGTAGTGACAGAGGTAGGAAGCAAGGTACAAAATTTCAAAGTTGGAGACAAAGTTGGAGTGGGGGTGCTGGTTGCATCATGCAAGTCATGCGAGAGCTGTGCTGGTGATCTTGAGAATTTCTGTCCACAAATGGTCCTAACATACAGTGCCAAGAACAAGGATGGCACCATCACCTACGGCGGCTATTCTGACTCGATGGTCGTCGACGAAGCCTTCGCCATCCGCATCCCGGATAACCTTCCTCTTGATGTTGCTGCTCCTTTGCTCTGTGCCGGAATCACGGTGTATAGCCCTCTCCGGTATTTCGGACTTGACAAGCCTGGTTTGCATGTTGGTGTGGTTGGTCTTGGTGGTCTTGGCCATGTGGCCGTTAAGTTTGCCAAAGCTTTTGGTTGTAAAGTAACGGTTATTAGTACTTCTCCTAACAAAAAGAAGGAAGCCATTGAAAGCTTAGGAGCAGATTCGTTTCTCGTAAGTAGAGATCAAGATCAGATGAAGGGTGCAGTGTATACCCTGGATGGTATTATTGACACAGTTTCGGCGGTGCATCCTCTGGCTCCATTACTGGCTCTATTGAAGGCTAATGGAAAACTTGTGATGGTTGGCTTACCAGAAAAGCCTCTCGAGTTGCCAATATTTTCTCTTACTACGGGAAGAAAGTCGATAGCTGGTAGCTGTATTGGAGGGATAAAAGAGACACAAGAAATGATTGATTTTGCTGCTAAGCATAACGTGAAACCTGACATTGAAGTTATTGCAATGGATTATGTAAACACAGCCATGGAGCGCCTCGTTAAGGCAGATGTCAAGTATCGTTTTGTTATTGATGTTGGAAACACTCTCAAATCAACCTCTTAA 1221 0.4808 MTTNVSECINGVLKGTRRLPVAATMRATYERLQQLFIRKGWEAMAQLNAGQQWSQHLIQAEVFTVDELEETESTDVNTAHNWLPMGLATPMPTAAPTATPFRLFSTTYVHTDTLKEHEIAGVVTEVGSKVQNFKVGDKVGVGVLVASCKSCESCAGDLENFCPQMVLTYSAKNKDGTITYGGYSDSMVVDEAFAIRIPDNLPLDVAAPLLCAGITVYSPLRYFGLDKPGLHVGVVGLGGLGHVAVKFAKAFGCKVTVISTSPNKKKEAIESLGADSFLVSRDQDQMKGAVYTLDGIIDTVSAVHPLAPLLALLKANGKLVMVGLPEKPLELPIFSLTTGRKSIAGSCIGGIKETQEMIDFAAKHNVKPDIEVIAMDYVNTAMERLVKADVKYRFVIDVGNTLKSTS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181797g00003 406 FunFam Putative cinnamyl alcohol dehydrogenase 6 369 398 - -
Stsc181797g00003 406 SMART PKS_ER_names_mod 86 396 IPR020843 GO:0016491
Stsc181797g00003 406 Pfam Zinc-binding dehydrogenase 239 362 IPR013149 -
Stsc181797g00003 406 CDD CAD1 117 397 IPR047109 GO:0016616
Stsc181797g00003 406 PANTHER ALDEHYDE REDUCTASE 116 401 IPR047109 GO:0016616
Stsc181797g00003 406 FunFam Cinnamyl alcohol dehydrogenase 212 368 - -
Stsc181797g00003 406 SUPERFAMILY GroES-like 117 229 IPR011032 -
Stsc181797g00003 406 Gene3D - 212 368 - -
Stsc181797g00003 406 Gene3D - 116 398 - -
Stsc181797g00003 406 Pfam Alcohol dehydrogenase GroES-like domain 116 196 IPR013154 -
Stsc181797g00003 406 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 201 367 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181797g00003 Stsc-Chr181797 15103 18039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181797g00003 117 403 Monolignol Biosynthesis Gene Families AT4G37990 71.777 1.86e-130 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181797g00003 K23232 - gmx:100816901 442.195