Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181797g00002 ATGGCAACACAACCTGAACTTGAGCATCCTATTAAGGCCTTTGGTTGGGCAGCTAGGGATACTTCTGGTGTTCTCTCACCTTTTAATTTCTCTAGAAGGGAAACGGGAGAGAAGGATGTGGCATTCAAAGTTTTGTACTGTGGGGTATGCCACTCTGACTTACACATGCTCAAAAATGAATGGGGATTTTCTCTATATCCAATTGTTCCTGGGCATGAGATAGTAGGCATAGTGACAGAGGTGGGAAGCAAGGTAAATAAGTTCAAAGTTGGGGACAAAGTTGGGGTTGGATGCATGGTTGGTTCTTGCCGCAACGACGAATGCGAAAACTGTGCTGATCATCTAGAGAACTACTGTCCACAAATGGTTCTCACATATGGTGTCAAAGACACCAGTGACTCCATCACCTATGGTGGCTACTCTGACTTAATGGTTGCTGATGAAAACTTTGTGGTCCGAATTCCAGAAGGCTTTCCTCTTGATACTGCTGCTCCTCTCCTTTGTGCTGGGATCACTGTGTATAGCCCTCTTAGATATTATGGACTTGACAAGCCTGGTTTGCATGTGGGTGTGGTTGGTCTTGGTGGGTTAGGCCACATGGCTGTTAAGTTCGCCAAAGCTTTTGGGGTTAAGGTAACCGTGATCAGCACTTCCCCTGATAAGAAGGAAGAAGCTATTCAACGTTTAGGAGCTGACAACTTCCTTATGAGTAGAGACCATGATCAGATTCAGGCTGCAACGGGGACATTTGATGGGATTATTGACACAGTTTCTGCCTTGCATCCTTTGTTGCCTCTAATTAGTTTATTGAAGTCTCATGGGAAGCTCGTAATGGTTGGAGCACCAGAGAAGCCTCTAGAGCTGCCAATATTTCCTTTAATTATGGGAAGAAAGACAGTTGCCGGAAGTAGCATCGGAGGGATGAAGGAGACACAAGAGATGATTGATTTTGCTGCTAAACATGATGTGAAACCTGAAATCGAGCTTATTCCCATTCATTATATTAATACAGCATTGGAGCGCCTCCTCAAAGCCGATGTCAAGTATCGATTTGTCATTGACATTGGAAACACTCTAAAACCCACCACTTGA 1092 0.4441 MATQPELEHPIKAFGWAARDTSGVLSPFNFSRRETGEKDVAFKVLYCGVCHSDLHMLKNEWGFSLYPIVPGHEIVGIVTEVGSKVNKFKVGDKVGVGCMVGSCRNDECENCADHLENYCPQMVLTYGVKDTSDSITYGGYSDLMVADENFVVRIPEGFPLDTAAPLLCAGITVYSPLRYYGLDKPGLHVGVVGLGGLGHMAVKFAKAFGVKVTVISTSPDKKEEAIQRLGADNFLMSRDHDQIQAATGTFDGIIDTVSALHPLLPLISLLKSHGKLVMVGAPEKPLELPIFPLIMGRKTVAGSSIGGMKETQEMIDFAAKHDVKPEIELIPIHYINTALERLLKADVKYRFVIDIGNTLKPTT 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181797g00002 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 159 324 IPR036291 -
Stsc181797g00002 363 Pfam Alcohol dehydrogenase GroES-like domain 38 153 IPR013154 -
Stsc181797g00002 363 Gene3D - 169 325 - -
Stsc181797g00002 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Stsc181797g00002 363 Pfam Zinc-binding dehydrogenase 196 319 IPR013149 -
Stsc181797g00002 363 Gene3D - 16 355 - -
Stsc181797g00002 363 FunFam Uncharacterized protein 16 168 - -
Stsc181797g00002 363 CDD CAD1 14 354 IPR047109 GO:0016616
Stsc181797g00002 363 FunFam Putative cinnamyl alcohol dehydrogenase 6 326 355 - -
Stsc181797g00002 363 PANTHER ALDEHYDE REDUCTASE 5 358 IPR047109 GO:0016616
Stsc181797g00002 363 FunFam Cinnamyl alcohol dehydrogenase 169 325 - -
Stsc181797g00002 363 SMART PKS_ER_names_mod 23 353 IPR020843 GO:0016491
Stsc181797g00002 363 SUPERFAMILY GroES-like 9 201 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181797g00002 Stsc-Chr181797 9852 11837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181797g00002 12 362 Monolignol Biosynthesis Gene Families AT4G37990 70.655 3.24e-172 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181797g00002 K23232 - qsa:O6P43_025192 585.874