Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181797g00001 ATGCATGGCTTCCATATCACTCGGTGGAGTAGAGGTTTAAATGAATTGGCATCCCCGGCTAGTCTGAATACTGAAAATGACCAGGTGGTCCTTCAAAACGGTATCGTTTCCATCACAATAGCAAAGCCTGGGGGCTACATCCTTGGAATATCATATAATGGAATTGACAACGTACTTGAAGCTCGAAATGATAAAAACGATAGAGGGTACGTGGACTTTGTTTCAAATGAACCAGGAAAACCTGGCGGAGAACCAAAAATCGAGATGACAGATTTTAAAGTGATATCACAGGACCAGAATATGGCGGAAGTTTCATTTACAAGAACATGGTCATCTTCAGGAGGGGGTGTCCCCTTCAATATAGACATAAGGTATATATTGAGAAGAGGCGATTCTGGGTTTTATCCGTACCTAATAGTGGAACGTCTAGATGGATTTCCTGCTGTGGAAATTGATCAAATTAGGATTGTTTTCAAGCTCGCCACTGGCAGGTTCCACTATATGGCTATAACAAACACAAGACAGAGGTTGATGCCATCGATGAGAGATAGAGAAAGTGGTCAAACCCTAGATTATCCTGAAGCCGTTCGCTTAACCAGGCCATTAGAACGAGAATTTGATGGAGAGGTGGATGACAAGTACCAATACTCCATTGAGAATGAAGACAACAAGGTTAATGGCTGGATTAGTCCAGATTCAGCACCACGTGTGGGTTTCTGGATCTTAACACCAAGTAATGAGTTCCGCAATTGTGGGCCTATTAAGCAAGATCTCACTTCTCACACCGGCCCATTTGCCCTATCTATGTTTGTGAGCAACCACTATGCGGGTAAGGAGGTAAATATGAAATTTGAGAAAGGGGAACTTTATAAAAAGGTTTTCGGCCCTGTTTTTATCTACCTCAACTCTGGTTCAACTAGTCAACAATTGTGGTCAGATGCCGTACAAAAGCAATCTAATGAAGCCAAATCATGGCCATACAATTTCCCTCGATCAATCGATTTCATTCAAGCAAATAAACGTGGTACAGTATCAGGAAGGTTGCAAGTCCAAGATAGGTTCATCAAGGAACAGGGCCCTCAAAATGCTAACAATGCGTATGTCGGTTTAGCTTTACCTGGAGATCCCGGATCATGGCAGAAAGAAAGCAAGGGTTATCAATTTTGGACTCGAACTGACAAGAATGGTAATTTTGTAATTAACAATATTCTACCCGGTGATTACAATTTGTATGCATGGGTTCCTGGTTTTATTGGAGACTACAAATACAATAATACAATAACCATCGCCCCAGGAGGGTCCACGAAGTTGAACACACTTGTGTATAATCCTCCAAGAAATGGTCCAACACTTTGGGAGATTGGAATTCCTGATCGCTTAGCTGCTGAGTTTTTTGTGCCAGACGCTAGCCCTCAGTTTACCAACTTCTTATACAGAGATGATAATGCTAACAAATTTAGGCAATATGGATTGTGGGAACGTTATGCCGAGTTACACCCAAATAATGATCTTGTATTCACTCTTGGTGCTAATGACTATACCAAGGATTGGTATTTTGCTCACGTTACAAGGAAAACAGGAGACAAAAGATACATACCAACCACGTGGCAAATTGTGTTTGACCTTCCAAATGTCATATCCGGAAGAATGTACACACTACAAGTGGCTTTGGCATCCTCAACTGAAGCTGCATTGCAGGTTTGGTTCAATGATCCTAAAAATGCAGATCCTCCACACTTTGCAACAGGGCAAATAGGAGATGACAATGCCATAGCAAGGCATGGCATTCACGGATTGTATAAGCTGTTAAGCATAAGTGTAAGCGGGAAGCGTTTGGTGAAAGGCAAGAACACTATCTATTTGAAGCAATCAAAAGCTAGAACTCCTTTTGAAGGATTCATGTATGATTATATCCGCTTAGAAGCTCCTCCACTTCTATCTCCTTCCTTTGATCACTAA 1959 0.416 MHGFHITRWSRGLNELASPASLNTENDQVVLQNGIVSITIAKPGGYILGISYNGIDNVLEARNDKNDRGYVDFVSNEPGKPGGEPKIEMTDFKVISQDQNMAEVSFTRTWSSSGGGVPFNIDIRYILRRGDSGFYPYLIVERLDGFPAVEIDQIRIVFKLATGRFHYMAITNTRQRLMPSMRDRESGQTLDYPEAVRLTRPLEREFDGEVDDKYQYSIENEDNKVNGWISPDSAPRVGFWILTPSNEFRNCGPIKQDLTSHTGPFALSMFVSNHYAGKEVNMKFEKGELYKKVFGPVFIYLNSGSTSQQLWSDAVQKQSNEAKSWPYNFPRSIDFIQANKRGTVSGRLQVQDRFIKEQGPQNANNAYVGLALPGDPGSWQKESKGYQFWTRTDKNGNFVINNILPGDYNLYAWVPGFIGDYKYNNTITIAPGGSTKLNTLVYNPPRNGPTLWEIGIPDRLAAEFFVPDASPQFTNFLYRDDNANKFRQYGLWERYAELHPNNDLVFTLGANDYTKDWYFAHVTRKTGDKRYIPTTWQIVFDLPNVISGRMYTLQVALASSTEAALQVWFNDPKNADPPHFATGQIGDDNAIARHGIHGLYKLLSISVSGKRLVKGKNTIYLKQSKARTPFEGFMYDYIRLEAPPLLSPSFDH 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181797g00001 652 Pfam Polysaccharide lyase family 4, domain II 364 437 IPR029413 -
Stsc181797g00001 652 FunFam Rhamnogalacturonate lyase B 337 437 - -
Stsc181797g00001 652 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 24 644 - -
Stsc181797g00001 652 Gene3D - 20 317 IPR014718 GO:0030246
Stsc181797g00001 652 CDD RGL4_C 452 641 - -
Stsc181797g00001 652 Gene3D - 336 440 - -
Stsc181797g00001 652 Pfam Polysaccharide lyase family 4, domain III 450 640 IPR029411 -
Stsc181797g00001 652 Pfam Rhamnogalacturonate lyase family 25 210 IPR010325 -
Stsc181797g00001 652 SUPERFAMILY Galactose mutarotase-like 24 308 IPR011013 GO:0003824|GO:0005975|GO:0030246
Stsc181797g00001 652 CDD RGL4_N 21 310 - -
Stsc181797g00001 652 Gene3D - 448 641 - -
Stsc181797g00001 652 SUPERFAMILY Galactose-binding domain-like 447 641 IPR008979 -
Stsc181797g00001 652 CDD RGL4_M 340 440 IPR029413 -
Stsc181797g00001 652 SUPERFAMILY Starch-binding domain-like 338 440 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181797g00001 Stsc-Chr181797 5254 9596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181797g00001 10 643 Polysaccharide Lyase AT4G37950 53.188 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181797g00001 K18195 - gmx:100776664 855.899