Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181792g00003 | ATGAAAGCCAATCAGAGACTAGCCATGCTGTTTGTTGATAATTTACCAAAACATGTAACAAAGAGATTCCTCTACTGGGAATTTGGAAGATATGGAAGTGTTGTAGATGTTTATATATCCAGAAAGAAAAGGAAAACCAAAAGCTGTCCGTTTGCATTTATCAGATACGATGCATATGGTGGAGCAGTAAGAGCAAGGGAGGGATTACATGGATCCTTCATGGTTGGAAAGCCAATTACTGTGAAGGTGTCCATGTATGAAAGAACTTCTATGAGGAATACAGATGGGGGCATAGGTATCGGAGTAGATCGGAAGAAGGATGGAAGAATATTTGTGATGGTGAATGCGTCGGAGAAACAAAAAGACCTATTGGATAGAAGTATCATTGCTGAAAGCTTTGAGCTAATCAAGTTCGGCTACGTTGTGGAGTCACTGAAGAATTTTGACGAAGTATATGGAAAGATCGAGTGTAGGGACCTTGGACCTCGAAAATGCATCCTAACCTGTCACTGCAGAGCGTAG | 522 | 0.41 | MKANQRLAMLFVDNLPKHVTKRFLYWEFGRYGSVVDVYISRKKRKTKSCPFAFIRYDAYGGAVRAREGLHGSFMVGKPITVKVSMYERTSMRNTDGGIGIGVDRKKDGRIFVMVNASEKQKDLLDRSIIAESFELIKFGYVVESLKNFDEVYGKIECRDLGPRKCILTCHCRA | 173 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181792g00003 | 173 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 8 | 86 | IPR000504 | GO:0003723 | |
Stsc181792g00003 | 173 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 103 | IPR035979 | GO:0003676 | |
Stsc181792g00003 | 173 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 10 | 79 | IPR000504 | GO:0003723 | |
Stsc181792g00003 | 173 | Gene3D | - | 1 | 111 | IPR012677 | - | |
Stsc181792g00003 | 173 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 9 | 86 | - | - | |
Stsc181792g00003 | 173 | SMART | rrm1_1 | 9 | 82 | IPR000504 | GO:0003723 | |
Stsc181792g00003 | 173 | CDD | RRM_SF | 10 | 82 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181792g00003 | Stsc-Chr181792 | 25086 | 25691 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181792g00003 | 7 | 102 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 29.592 | 9.06e-07 | 46.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181792g00003 | K12891 | - | ahf:112794598 | 103.219 |