Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181792g00003 ATGAAAGCCAATCAGAGACTAGCCATGCTGTTTGTTGATAATTTACCAAAACATGTAACAAAGAGATTCCTCTACTGGGAATTTGGAAGATATGGAAGTGTTGTAGATGTTTATATATCCAGAAAGAAAAGGAAAACCAAAAGCTGTCCGTTTGCATTTATCAGATACGATGCATATGGTGGAGCAGTAAGAGCAAGGGAGGGATTACATGGATCCTTCATGGTTGGAAAGCCAATTACTGTGAAGGTGTCCATGTATGAAAGAACTTCTATGAGGAATACAGATGGGGGCATAGGTATCGGAGTAGATCGGAAGAAGGATGGAAGAATATTTGTGATGGTGAATGCGTCGGAGAAACAAAAAGACCTATTGGATAGAAGTATCATTGCTGAAAGCTTTGAGCTAATCAAGTTCGGCTACGTTGTGGAGTCACTGAAGAATTTTGACGAAGTATATGGAAAGATCGAGTGTAGGGACCTTGGACCTCGAAAATGCATCCTAACCTGTCACTGCAGAGCGTAG 522 0.41 MKANQRLAMLFVDNLPKHVTKRFLYWEFGRYGSVVDVYISRKKRKTKSCPFAFIRYDAYGGAVRAREGLHGSFMVGKPITVKVSMYERTSMRNTDGGIGIGVDRKKDGRIFVMVNASEKQKDLLDRSIIAESFELIKFGYVVESLKNFDEVYGKIECRDLGPRKCILTCHCRA 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181792g00003 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Stsc181792g00003 173 SUPERFAMILY RNA-binding domain, RBD 9 103 IPR035979 GO:0003676
Stsc181792g00003 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Stsc181792g00003 173 Gene3D - 1 111 IPR012677 -
Stsc181792g00003 173 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 9 86 - -
Stsc181792g00003 173 SMART rrm1_1 9 82 IPR000504 GO:0003723
Stsc181792g00003 173 CDD RRM_SF 10 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181792g00003 Stsc-Chr181792 25086 25691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181792g00003 7 102 Eukaryotic Initiation Factors Gene Family AT3G16380 29.592 9.06e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181792g00003 K12891 - ahf:112794598 103.219