Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181791g00002 ATGGTAGAACCTGCATATACTGTGGCATCTGACTCTGAGACCACAGGAGAGGAAAAGTCATCTGCAACATTTCCTGAAATTGCAATTGGAATCGATATCGGCACATCTCAATGCAGCATTGCTGTGTGGAATGGTTCCCAAGTGGAGCTTCTTAAGAACACGAGAAATGAGAAGATAATGAAGTCCTATGTGACCTTCAGAGATGATCTACCTTCTGCTGGAGTTAGCAATAACCTTTCACATGACCATGAAATGTTGTCCGGATCCGCAATCTTCAACATGAAGCGATTAATTGGCAGAGGTGATGCTGATCCAATCATCCATTCCTGTAAAAATCTCCCATTTCTGGTACAGACCTTGGAAATTGGTGTCCGCCCATTTATTGCTGCCTTGGTGAACAATATGTGGAGATCCACCACTCCTGAAGAAGTGTTGGCAATATTTCTGGTGGAGTTAAGAGCAATGGCTGAAGCTCAATTGAAATGTCCAATAAGAAATGTAGTGATTACAGTTCCGGTTTCATTCAATCGGTTCCAGCTAACCCGGGTTGAACGTGCTTGTGCCATGGCTGGCCTTCATGTCCTCAGGCTGATGCCTGAACCGACAGCTGTGGCTTTGTTATATGCACAGCAGCAGCAGAAGACATCTCATGACAATATGGGCAGTGGTAGTGAGAAAATCGCTCTTGTTTTCAATATCGGTGCTGGTTATTGTGATGTTGCTGTGACCGCTACAGCTGGAGGAGTATCACAGATAAAATCCTTGGCAGGAAGTACCATCGGTGGGGAAGACTTACTTCAGAATATGATGCGCCATCTCTTACCGGATTCTGAAAGCTTATTTAGGAACCGCAGTGCCAAAGAAATTAAGACAATTGGCTTGCTTCGACTTGCAACTCAGGATGCAATTCATAGGCTTTCTTCTGAGTCCAATGTCCAGGTTGATATAGATTTGGGAGATGGACTGAGGATATCCAAGGTTATTGACCAGGAAGAGTTTGAGGAAGTAAACAGAATGATATTTGAGGAGTGTGAAAGCCTTATTATCCGGTGTTTGCAAGATGCAAAGGTAGAAGTTGAGGATGTAAATGATGTGATAATTGTTGGTGGATGTTCCCATATTCCAAAGGTGAAGAATCTTGTTAATAGCATATTCAAAGGGAAGGAGCTTTATAAAGGTATGAATCTCTTGGAAGCTGCCGTTTGTGGCGCAGCAGTGGAAGGAGCTATTGCTTCGGGTATCAGTGATCCCTTTGGGAACTTGGACTTGTTAACCATCCAATCAACGCCACTTGCTATAGGAATTCGAGCTGATGGAGGCAATTTTGTCCCTATAATACCAAGGAATACTGCAATGCCCGTGAAGAAGGGGCTAGTATTTACAACTCTTCATGATAATCAAACCGAGGCATTGATTGTTGTATACGAAGGTGAAGAAGGAAAGAAGGCAGAAGAGAATCACTTGCTGGGATATTTTAAGATAATGGGAATACCTTCAGCACCAAAAAGCATTCCTAAAATTGATTTATGCATGGACATAGATGCTTCAAACGTGTTGCGAGTTTTAGCTGGTGTTGTGATGCCTGGATCACGACAACCCGCAATTCCTGTCATGGAAGTGAGGATGCCAATGGTTGATGATGGGCATGGTTGGTGTGCTGAGGCTCTAAATAGAAACTATGGTTCAACACTGGATTTGGTAACTGTCAATACCAAGGCATAG 1722 0.4332 MVEPAYTVASDSETTGEEKSSATFPEIAIGIDIGTSQCSIAVWNGSQVELLKNTRNEKIMKSYVTFRDDLPSAGVSNNLSHDHEMLSGSAIFNMKRLIGRGDADPIIHSCKNLPFLVQTLEIGVRPFIAALVNNMWRSTTPEEVLAIFLVELRAMAEAQLKCPIRNVVITVPVSFNRFQLTRVERACAMAGLHVLRLMPEPTAVALLYAQQQQKTSHDNMGSGSEKIALVFNIGAGYCDVAVTATAGGVSQIKSLAGSTIGGEDLLQNMMRHLLPDSESLFRNRSAKEIKTIGLLRLATQDAIHRLSSESNVQVDIDLGDGLRISKVIDQEEFEEVNRMIFEECESLIIRCLQDAKVEVEDVNDVIIVGGCSHIPKVKNLVNSIFKGKELYKGMNLLEAAVCGAAVEGAIASGISDPFGNLDLLTIQSTPLAIGIRADGGNFVPIIPRNTAMPVKKGLVFTTLHDNQTEALIVVYEGEEGKKAEENHLLGYFKIMGIPSAPKSIPKIDLCMDIDASNVLRVLAGVVMPGSRQPAIPVMEVRMPMVDDGHGWCAEALNRNYGSTLDLVTVNTKA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181791g00002 573 Gene3D Actin; Chain A, domain 4 262 343 - -
Stsc181791g00002 573 SUPERFAMILY Actin-like ATPase domain 27 210 IPR043129 -
Stsc181791g00002 573 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 419 535 IPR029047 -
Stsc181791g00002 573 FunFam Heat shock 70 kDa protein 8 262 343 - -
Stsc181791g00002 573 SUPERFAMILY Actin-like ATPase domain 225 412 IPR043129 -
Stsc181791g00002 573 Gene3D - 213 391 - -
Stsc181791g00002 573 PRINTS 70kDa heat shock protein signature 167 187 - -
Stsc181791g00002 573 PRINTS 70kDa heat shock protein signature 362 378 - -
Stsc181791g00002 573 PRINTS 70kDa heat shock protein signature 394 414 - -
Stsc181791g00002 573 PRINTS 70kDa heat shock protein signature 27 40 - -
Stsc181791g00002 573 PRINTS 70kDa heat shock protein signature 55 67 - -
Stsc181791g00002 573 PRINTS 70kDa heat shock protein signature 422 441 - -
Stsc181791g00002 573 PRINTS 70kDa heat shock protein signature 504 520 - -
Stsc181791g00002 573 FunFam Heat shock 70 kDa protein 8 417 533 - -
Stsc181791g00002 573 PANTHER HEAT SHOCK PROTEIN 70KDA 28 523 IPR013126 GO:0005524|GO:0140662
Stsc181791g00002 573 Pfam Hsp70 protein 28 524 IPR013126 GO:0005524|GO:0140662
Stsc181791g00002 573 Gene3D - 92 147 - -
Stsc181791g00002 573 MobiDBLite consensus disorder prediction 1 21 - -
Stsc181791g00002 573 CDD HSP70_NBD 29 409 - -
Stsc181791g00002 573 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 424 531 IPR029047 -
Stsc181791g00002 573 Gene3D - 29 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181791g00002 Stsc-Chr181791 7654 9664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181791g00002 28 523 Calmodulin-binding Proteins AT3G12580 37.205 2.42e-101 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181791g00002 K09489 - gmx:100809773 951.429