Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181788g00001 ATGGAGCAAGAAGAATATACAAAGGAAAAAATCAATTGGAGTTATATAGAGTTTGTTGATAATCAAGATGTTCTTGACCTCATAGAAAAGAAACCAGGTGGCGTTATTGCTCTTCTAGATGAGGCATGCATGTTTCCAAGATCAACACATGAAACATTTGCTGAAAAGCTATATCAAACATTTAAAGACAATAAAAGGTTCAGCAAGCCAAAGCTGTCTCGTACGGATTTCACAATAAACCACTATGCTGGTGATGTGACTTACCAAACAGACCTTTTCCTTGATAAGAACAAAGACTATGTTGTTCCAGAGCATGCTGCCTTACTCAATGCTTCAAAGTGCGACTTCGTTTCAGGATTGTTCCCACCTTTACCTGAGGAAACTTCCAAATCAACCAAGTTTGCTTCTGTTGCCACTCAGTTTAAGCAACAGCTACAGTCTTTACTGGAAACACTAAACGCTACTGAGCCACACTATATCCGCTGTGTAAAGCCCAATAACCTTCTTAAGCCTGGGATATTTGAGAACAATAATGTGTTGCAGCAGCTACGATGCGGTGGAGTAATGGAGGCAATACGAATTAGTTGTGCCGGATATCCTACCAGGAAGAACTTTGATGAATTCATTAAACGATTTAGTATCCTAGAACCTAAGGTTCTTACAGCATGCCCTGATGAAAAGGCCGGTTGCCAGATGCTTCTTGATAAAGTGAACCTTAAAGATTATCAGATTGGAAAGACAAAAGTGTTTCTAAGAGTAGGACAAATGGCACATCTAGATGCCTTTAGAGCAGAGGTATTAGGAAGATCTGCAAGCATTATTCAAAGAAAAGTTCGCACACATCTTTGCCAAAAACACTACAATATATTGCGCATATCTGCAATAGAACTACAAAGGGTAGCCAGAGGAGTACTTACACGCTGTCTTTATGAAAAAATGAGGAGGGAAGATGCTTCTGTGAAAATTCAAAAGAACTTTCGCATGCATATTTTCAGGGATGCTTATCAATCCCTGCAGGCTTCAGCTGTATTCATTCAGACTGCTATGAGAGGCAAGCAGGCTAGAAGTCAACTCAGATATAAGAAGTTAACCAGAGCTGCAGTGATCATTGAGGCTGCTAAGGAATCCAAGGCTCTTGAAGCTGCGAAAAAAGAACTTGAAAGGCAAGTGGAAGAATTGAGTTTGTCTTTAGAATCGGAGAAAAGAATGAGGGAAGCCGAGACACAGGAAAATGAAAAATTACAATCAGCTTTGCAAGAGATGGAGCAACAACTCAAAGAAACTCAGGAATTGCTTCTTAAAGAACGCCAGGCTCCTAAAACTACTGATGGTGGAACAACTATGCAAGTTATTCAATCTAACGAAACTGATACTGATATGGAATTGATTAGCAAGCTTACTGCAGAAAATGAACAACTCAAGGGTTTGGTTAATTCATTGGAAAAGAAAACCACGCTAGAAATTCCCAGCAATATGACTGAGAATGAAGTGATCAACAAGCTTTGTTCAGAGAGGGAACTTCTTATGAATCAAGTTAGTTCACTAGAAAAGAAAATCGACGAAACAGAAAGGAAATATGAGGAATGTAGCAAACTCAGCGAAGAGCGGATGAATCAAATCATAGAGACCGAAAGCAAGATAATTGAGCTAAAGACATCAATGCAAAGGCTTGAAGAAAAAGTTTCTGATATGGAAACTGAGAATCAAGTTTTAAGGCAGCAAACCCTTTTGAGTTCGTCATCAAAGAAAATGTCAGACAAGGCAGCTACTGCAGTTCAGTCATCGGAAAATGGTACTAATCAGGCATCAACATCATCAAATTTGAGCCAGACAAAGGCATTTGGAACCGATGCCGATAGTAAAGAGAGCATCGAAACTCTATTCAAATGCGTCCAGAAAGAGCTTGGATTCTCGGAAGGAAAACCGGTGGCAGCATTTACCCTCTATAACTGTCTGCTACATTGGAGGTGTTTTGAAGCAGAAAAGACAAGTATATTTGATCGTCTTATTCAGCTGATTGGATCTGCAATAGAGGATCAAGATAACAATGATTGCATGGCTTATTGGTTGTCCAACACATCTTCTTTGTTGTTCCATCTCCAGCGAACTCTCAGAGTACCTACCGCACGAAAGCCCCCCACTCCAACATCTTTCTTTGGAAGAGTCACCCAGGGATTTCGGTCATCCAAAAGTCTTTCTAGTGGTTCATTTGATGTAGAGCATCAAGTTGATGCCAAGTACCCTGCTTTGCTTTTCAAGCAACAACTTGCAGCTTACGTTGAGAAGATTTATGGAATTCTTAGAGAAAATTTGAAGAAAGACATATCACCTCTAGTTTCTGCTTTCATTCAGGCTCATGGAATGTCAGATGATAACAACCAGCCAGCTGCTTCATGGACTGGCATTGTACAATGCATTAACAAATATCTCAATGTTTTCAAAGAAAACCATGTGCATCCAGTTCTCGTTCAGAAGATACTCAGCCAAGTTTTTCAATATATTAATGTGGAAATCTTTAATAGCCTTGTTTCACAAAAAGAATGTTGCACATTCAACAATGGACAACTTATCAGATCAGGATTGGCTGAACTGGAACAATGGTCTACTGAAGCAACAGAAGAGGTTGCAGAGAAAAAGGATGAATTATCATATGACAGTCTTACAAATGAACTATGCCCTGTCCTTAGTTCTCACCAGCTTTACAGAATATGTACACTTTACTCAGATGGAAATGAAAATGACAATAACCAAAGTGTATCAGCTGATGTCATCTCTAGTTTGAAGCTTCTAACGACAGATGGTGTAGAAGATGATAGTAAATCCTACTTGCTAGAAGACAATTCAAGTATCCCTATTATTGTTGAGGAGGTTTCTAGCTCCCTAAAAGATAGGCCCACTTCAAAAGTAAAACCTCCTGAAGAACTTCTTGAGCATGCAAGCTTCCAATTTTTACATGACTATTCTTAA 2967 0.3927 MEQEEYTKEKINWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTFKDNKRFSKPKLSRTDFTINHYAGDVTYQTDLFLDKNKDYVVPEHAALLNASKCDFVSGLFPPLPEETSKSTKFASVATQFKQQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNNVLQQLRCGGVMEAIRISCAGYPTRKNFDEFIKRFSILEPKVLTACPDEKAGCQMLLDKVNLKDYQIGKTKVFLRVGQMAHLDAFRAEVLGRSASIIQRKVRTHLCQKHYNILRISAIELQRVARGVLTRCLYEKMRREDASVKIQKNFRMHIFRDAYQSLQASAVFIQTAMRGKQARSQLRYKKLTRAAVIIEAAKESKALEAAKKELERQVEELSLSLESEKRMREAETQENEKLQSALQEMEQQLKETQELLLKERQAPKTTDGGTTMQVIQSNETDTDMELISKLTAENEQLKGLVNSLEKKTTLEIPSNMTENEVINKLCSERELLMNQVSSLEKKIDETERKYEECSKLSEERMNQIIETESKIIELKTSMQRLEEKVSDMETENQVLRQQTLLSSSSKKMSDKAATAVQSSENGTNQASTSSNLSQTKAFGTDADSKESIETLFKCVQKELGFSEGKPVAAFTLYNCLLHWRCFEAEKTSIFDRLIQLIGSAIEDQDNNDCMAYWLSNTSSLLFHLQRTLRVPTARKPPTPTSFFGRVTQGFRSSKSLSSGSFDVEHQVDAKYPALLFKQQLAAYVEKIYGILRENLKKDISPLVSAFIQAHGMSDDNNQPAASWTGIVQCINKYLNVFKENHVHPVLVQKILSQVFQYINVEIFNSLVSQKECCTFNNGQLIRSGLAELEQWSTEATEEVAEKKDELSYDSLTNELCPVLSSHQLYRICTLYSDGNENDNNQSVSADVISSLKLLTTDGVEDDSKSYLLEDNSSIPIIVEEVSSSLKDRPTSKVKPPEELLEHASFQFLHDYS 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181788g00001 988 Coils Coil 498 532 - -
Stsc181788g00001 988 Gene3D - 1 124 - -
Stsc181788g00001 988 Coils Coil 463 483 - -
Stsc181788g00001 988 Coils Coil 861 881 - -
Stsc181788g00001 988 Gene3D - 318 369 - -
Stsc181788g00001 988 Gene3D - 267 317 - -
Stsc181788g00001 988 Pfam IQ calmodulin-binding motif 269 287 IPR000048 GO:0005515
Stsc181788g00001 988 Pfam IQ calmodulin-binding motif 317 336 IPR000048 GO:0005515
Stsc181788g00001 988 Gene3D - 199 262 - -
Stsc181788g00001 988 PANTHER MYOSIN 1 910 - -
Stsc181788g00001 988 Pfam Myosin head (motor domain) 2 252 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181788g00001 988 Coils Coil 540 574 - -
Stsc181788g00001 988 SMART DIL_2 825 913 IPR002710 -
Stsc181788g00001 988 Pfam DIL domain 826 908 IPR002710 -
Stsc181788g00001 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 316 IPR027417 -
Stsc181788g00001 988 ProSiteProfiles Myosin motor domain profile. 1 264 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181788g00001 988 SMART iq_5 337 359 IPR000048 GO:0005515
Stsc181788g00001 988 SMART iq_5 289 311 IPR000048 GO:0005515
Stsc181788g00001 988 SMART iq_5 314 336 IPR000048 GO:0005515
Stsc181788g00001 988 SMART iq_5 266 288 IPR000048 GO:0005515
Stsc181788g00001 988 ProSiteProfiles IQ motif profile. 338 367 IPR000048 GO:0005515
Stsc181788g00001 988 SMART MYSc_2a 1 265 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181788g00001 988 Coils Coil 369 438 - -
Stsc181788g00001 988 Gene3D Kinesin motor domain 126 198 IPR036961 -
Stsc181788g00001 988 ProSiteProfiles IQ motif profile. 290 319 IPR000048 GO:0005515
Stsc181788g00001 988 ProSiteProfiles Dilute domain profile. 667 963 IPR002710 -
Stsc181788g00001 988 MobiDBLite consensus disorder prediction 576 614 - -
Stsc181788g00001 988 ProSiteProfiles IQ motif profile. 315 341 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181788g00001 Stsc-Chr181788 622 6464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181788g00001 1 985 Myosins gene family AT5G43900 51.664 0.0 1046
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181788g00001 K10357 - qsa:O6P43_003112 1073.54