Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181784g00005 ATGGATAACCCACACCAACACCAACAGCAACACCCCCGTGAATTGACTTTGTTACCCGTCAAAGAAGTGGATTTCTTCGCATCATCCTCTGCTGCCGATCAACAAGATGGCCCTCAACCTCATCATCACCCCTCCGTAAACACTGGGCTCAATTTAACATGTACTACTACTGGAATTTCAACTTCAACGGGATCACCTAATCCTGAATCCGACGAGAAGAAAATGGTGGAAAGTGAATTACGGAGACTGCAAGAAGAGAATCGGAAGCTGAGGAGTATGGTGGATCAAATCGCCAAAAGCTATAGCCAACTGCAGGCACAGCTCTTGTTGGCTTTGCAGAAACAAAACCCTCCTATTCATCATCAGAATAACATTGGTGTTAAAAGCAATAATGGGATGATAAGTGGAGAAAAAGGCGCGGAGGGAGATGGAAGGGCGAAAGTAGAGATGAAGAATAATAATGATGATGAGAAGAAAGAGAGAGAGGTATCAGCATCAAACAATAACGCGGATGAGGTAATGTCAAAGAAACATGATGATGATGATAATGATGAAGAAGAAGAAGATCATTTGACAAAGCTTCATCTGGGAAAGCAGGTAGATGAAGACGCCCTTGAGCGGTCTTCTTCTCAGAGTTGGGGTTCATGCAAGACTCCCAACTTAGAAGAACCCAATAAACTTCCTCCTTCTTCTTCTGCTGACCTTCCTTTCAGAAAAGCCAGGGTTTCAGTGCGTGCAAGATCTGAAGCTCCTCTAATTAGCGATGGATGCCAATGGAGAAAATACGGACAAAAAATGGCAAAGGGAAACCCCAGTCCTCGTGCGTACTATCGCTGCACCATGGCTGCTGGATGCCCAGTTCGCAAGCAGGTTCAAAGATGTGCTGAGGACACTACAGTTTTAATAACAACCTATGAAGGTAACCACAACCACCCTCTTCCTCCGGCTGCCACCGCCATGGCCAACACCACTTCAGCCGCAGCAGCCATGCTACTATCAGGCTCAACCTCATCTTCCAAAGAAGCCCTAACAGGAGGGTACTTGTCTTCAATGCCGTACACATCAATGGCCACACTATCAGCTTCAGCGCCATTCCCCACCATCACCCTCGACCTCACACACAACCACCCCAACGCACTCCAACTCCACCGTGTCCCTCCTTCACCTGTTACCTTCCCTCTCCCATTGCATGCACTTGCTCCCACTCCACATCATCATCAGCTTCTAGGGCATCCATTCTTAATCTCTCACCACCACCAACACAAGCTGATGCCTCCTTTGGTTCATCGACAACAACCACAGCCTTCCAATAACAATCCGTCTTCTATGGTGGAGACAGTGAGTGCAGCCATTGCTTCGGATCCAAACTTCACTGCGGCGGTGGCTGCCGCACTCTCATCCATCATTGGAGCACAAAGAGGAGGTGATGGTGGAAGTGGAAGTGCTGCTATGATTCACCCTAATAATGGTATTTCAGTGTCACCTAATGGATCACCTCAACTTCCTCAATCATGTACTACATACTCTACCAACTAG 1536 0.474 MDNPHQHQQQHPRELTLLPVKEVDFFASSSAADQQDGPQPHHHPSVNTGLNLTCTTTGISTSTGSPNPESDEKKMVESELRRLQEENRKLRSMVDQIAKSYSQLQAQLLLALQKQNPPIHHQNNIGVKSNNGMISGEKGAEGDGRAKVEMKNNNDDEKKEREVSASNNNADEVMSKKHDDDDNDEEEEDHLTKLHLGKQVDEDALERSSSQSWGSCKTPNLEEPNKLPPSSSADLPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPSPRAYYRCTMAAGCPVRKQVQRCAEDTTVLITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSTSSSKEALTGGYLSSMPYTSMATLSASAPFPTITLDLTHNHPNALQLHRVPPSPVTFPLPLHALAPTPHHHQLLGHPFLISHHHQHKLMPPLVHRQQPQPSNNNPSSMVETVSAAIASDPNFTAAVAAALSSIIGAQRGGDGGSGSAAMIHPNNGISVSPNGSPQLPQSCTTYSTN 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181784g00005 511 Gene3D WRKY domain 238 315 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181784g00005 511 MobiDBLite consensus disorder prediction 206 227 - -
Stsc181784g00005 511 ProSiteProfiles WRKY domain profile. 248 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181784g00005 511 Pfam WRKY DNA -binding domain 255 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181784g00005 511 MobiDBLite consensus disorder prediction 26 74 - -
Stsc181784g00005 511 MobiDBLite consensus disorder prediction 120 234 - -
Stsc181784g00005 511 MobiDBLite consensus disorder prediction 140 180 - -
Stsc181784g00005 511 SUPERFAMILY WRKY DNA-binding domain 246 314 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181784g00005 511 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 66 476 IPR044810 GO:0003700
Stsc181784g00005 511 SMART WRKY_cls 253 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181784g00005 511 MobiDBLite consensus disorder prediction 188 205 - -
Stsc181784g00005 511 FunFam probable WRKY transcription factor 31 238 315 - -
Stsc181784g00005 511 Coils Coil 73 100 - -
Stsc181784g00005 511 MobiDBLite consensus disorder prediction 485 511 - -
Stsc181784g00005 511 MobiDBLite consensus disorder prediction 28 69 - -
Stsc181784g00005 511 MobiDBLite consensus disorder prediction 473 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181784g00005 Stsc-Chr181784 23572 26616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181784g00005 20 511 WRKY Transcription Factor Family AT4G01720 41.973 7.77e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc181784g00005 WRKY 9.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181784g00005 - - gmx:100783661 410.609