Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181782g00002 ATGAAAGGAGAGTATGTAGAACACCACCACCTTCCAAAGAGTGAAGCACAAAACATGTTCTCAAAGCTTCACCACCAATCACCGCCTCATCAACAGCATCCGTTTTCTCTTCACAATCCATTCCAACATTTCTCAAGGGATCAATGCCAGCCCTCTGCCACGCCGGAAGAAGATAGCCATGGCGGCGGAGGTGTAGGCGGCGCCGCCAGTTCTCAGAAGCCGAACTCGTCCGGCGACGGAGCAACCATAGAGGTTGTAAGGAGGCCAAGAGGCCGCCCGCCGGGGTCCAAGAACAAGCCCAAACCGCCAGTGATCATAACGCGTGAGCCCGAGCCCGCCATGAGTCCGTACATTCTAGAAGTTTCTAGCGGAAACGACGTCGTTGAAGCGTTAGCGAGGTTCAGTCGGAGGAGGAACATGGGGATTTGCGTCCTTAATGGATCCGGAACCGTTGCTAACGCCACTCTACGTCAGCCCGGAGCAGCTCCCGGAGCCACCGTTACGTTTCACGGCCGATTCGATATCTTATCTGTTTCCGCCACGTTTCTTCCGCAGTCGTCGTCGCAGTCGGTTCCTACCGCCTTCGCCATCTCGCTTGCCGGACCGCAGGGGCAGATCGTCGGAGGACACGTCGCCGGAGGACTTACGGCCGCCACGACGGTGTTTGTTGTGGCGGCTTCGTTCAACAATCCTTCGTTTCATAGGCTGCCGCCGGAGGACGATGCGAGGAACGAGGTTTCCGGAGGGGAGGGTCAGTCGCCGGCGGTGTCTGGTGGCGGTGGTGAGAGTGGGCATGGTCAGGCGGTGGATTCGTGTGGGATGTCGATGTATAGCGGCGTTCATCACTTGGCGGGGGCGGCGTCGTCCGATGTGATATGGACTCCGACGGCAAGGGCGCCACCACCTCCTTACTGA 915 0.5847 MKGEYVEHHHLPKSEAQNMFSKLHHQSPPHQQHPFSLHNPFQHFSRDQCQPSATPEEDSHGGGGVGGAASSQKPNSSGDGATIEVVRRPRGRPPGSKNKPKPPVIITREPEPAMSPYILEVSSGNDVVEALARFSRRRNMGICVLNGSGTVANATLRQPGAAPGATVTFHGRFDILSVSATFLPQSSSQSVPTAFAISLAGPQGQIVGGHVAGGLTAATTVFVVAASFNNPSFHRLPPEDDARNEVSGGEGQSPAVSGGGGESGHGQAVDSCGMSMYSGVHHLAGAASSDVIWTPTARAPPPPY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181782g00002 304 MobiDBLite consensus disorder prediction 233 267 - -
Stsc181782g00002 304 SUPERFAMILY AF0104/ALDC/Ptd012-like 113 241 - -
Stsc181782g00002 304 MobiDBLite consensus disorder prediction 23 108 - -
Stsc181782g00002 304 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 60 273 IPR014476 GO:0003680
Stsc181782g00002 304 MobiDBLite consensus disorder prediction 23 55 - -
Stsc181782g00002 304 ProSiteProfiles PPC domain profile profile. 111 249 IPR005175 -
Stsc181782g00002 304 Pfam Plants and Prokaryotes Conserved (PCC) domain 116 230 IPR005175 -
Stsc181782g00002 304 Gene3D - 115 247 - -
Stsc181782g00002 304 FunFam AT-hook motif nuclear-localized protein 115 247 - -
Stsc181782g00002 304 CDD DUF296 116 225 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181782g00002 Stsc-Chr181782 27727 29692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181782g00002 79 302 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 65.665 2.80e-97 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181782g00002 - - adu:107460948 501.13