Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181773g00005 ATGAACCCCTACGATAACAGATACTCTGACGCCGCTTCTTATCGCAACCGTCGCAGCGATATCCTCGCTTCTGGTCCATTCATGGTGCCTCCTGCTGTTGGTCGTGGCGGTCCGGCTCCCTACGGTGCTCCTCCGGTCCCTTACGGAGCAGGAAGAGGAGCTTCCAATGCCTTCGGATCCTCGTCGGTTCCTCCCTTTATGCCTCCTCCTGGGGGTTTCAATATAGGCCGAGGCGGTGGTGGACTGGGTAATGGCCATGCCGGTGGCAGAAAAGACGGCGGAGGTCGTCACGGTTCTGGTGGAAGAGGTCGCGGTGGTGGTGGCAGAGGCGGCGGACCCGGTAGAGGCGGTGGAGGCGGTTTTAGGGGAGGCAGAAGTCACGGTGGTGGTAGAGGAGGAGGTGGTGGTAGACATGGTGGACGTTCATCGAAGGATGAATTGAACAAGATTTCCCTGCCAAAGCAGGATTTTAGGAATTTGGTCCCTTTTGAGAAGAATTTCTACGTTGAGTCCCCTGCAGTGAGGGCCATGTCCGATCAAGAAGTGATGCATTATCGTGAGAGTAGAGAAATCACAGTGCAAGGCCATGATGTGCCGAAACCCATTCGGATGTTCCATGAGGCCAGATTTCCCGATTACTGCCTTGAGGTGATTGAAAACCTGGGATTTGTTGAGCCGACTCCAATCCAGGCACAGGGTTGGCCGATGGCTCTTAAAGGCAGAGATTTGGTTGGCATTGCGGAGACTGGCTCTGGCAAAACTTTATCATATCTACTTCCTGCTTTGGTGCATGTCAGTGCACAACCTCGACTGGCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGAAGAAGCTCAGAAATTTGCAGGACGGGCAAATATCAGAAGTACGTGCATCTACGGTGGTGCACCAAAGGGGCCTCAAATTCGTGACCTTCAAAGGGGTGTTGAGATTGTTATTGCTACACCAGGTCGCCTAATAGATATGCTGGAAGCTCAGATCACAAACTTGCAGAGAGTTACTTACCTTGTCTTGGATGAAGCTGATCGAATGTTGGACATGGGTTTTGAACCTCAGATAAGGAAAATTGTAGGCCAGATTCGACCAGATAGACAGACGTTATATTGGAGTGCTACATGGCCAAAGGAGGTTGAAGCTCTGGCCAGGCAGTTCCTGCGCAACCCATATAAGGTAGTTATTGGGTCACCAGAACTGAAAGCAAACCAATCTATAAATCAAGTCGTCGAAGTTCTGACAGATGCAGAGAAATATAATAGATTGATTAGATTGATGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACAAGACAATTGAGAATGGATGGATGGCCTGCCCTATCCATCCATGGTGATAAAAATCAGGCTGAAAGGGACTGGGTTTTGTCTGAGTTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGGTAGGATCACTGTGTATTAA 1557 0.492 MNPYDNRYSDAASYRNRRSDILASGPFMVPPAVGRGGPAPYGAPPVPYGAGRGASNAFGSSSVPPFMPPPGGFNIGRGGGGLGNGHAGGRKDGGGRHGSGGRGRGGGGRGGGPGRGGGGGFRGGRSHGGGRGGGGGRHGGRSSKDELNKISLPKQDFRNLVPFEKNFYVESPAVRAMSDQEVMHYRESREITVQGHDVPKPIRMFHEARFPDYCLEVIENLGFVEPTPIQAQGWPMALKGRDLVGIAETGSGKTLSYLLPALVHVSAQPRLAHGDGPIVLVLAPTRELAVQIQEEAQKFAGRANIRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQITNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPKEVEALARQFLRNPYKVVIGSPELKANQSINQVVEVLTDAEKYNRLIRLMKEVMDGSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLSEFKSGRSPIMTATDVAARGLGRITVY 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181773g00005 518 MobiDBLite consensus disorder prediction 1 20 - -
Stsc181773g00005 518 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 203 231 IPR014014 GO:0003724
Stsc181773g00005 518 MobiDBLite consensus disorder prediction 70 151 - -
Stsc181773g00005 518 SMART ultradead3 222 425 IPR014001 -
Stsc181773g00005 518 Pfam DEAD/DEAH box helicase 227 397 IPR011545 GO:0003676|GO:0005524
Stsc181773g00005 518 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 234 409 IPR014001 -
Stsc181773g00005 518 Pfam Helicase conserved C-terminal domain 433 512 IPR001650 -
Stsc181773g00005 518 CDD SF2_C_DEAD 422 512 - -
Stsc181773g00005 518 CDD DEADc_DDX5_DDX17 215 410 - -
Stsc181773g00005 518 Gene3D - 166 413 IPR027417 -
Stsc181773g00005 518 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 180 512 - -
Stsc181773g00005 518 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 355 363 IPR000629 -
Stsc181773g00005 518 Gene3D - 415 513 IPR027417 -
Stsc181773g00005 518 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 437 518 IPR001650 -
Stsc181773g00005 518 FunFam probable ATP-dependent RNA helicase DDX17 165 412 - -
Stsc181773g00005 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 512 IPR027417 -
Stsc181773g00005 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 411 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181773g00005 Stsc-Chr181773 28162 31267 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181773g00005 200 512 Eukaryotic Initiation Factors Gene Family AT3G19760 32.907 1.33e-49 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181773g00005 K12823 - gmx:100777610 696.041