Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181766g00002 ATGGAGTCAACAACCCCCTTCTTCATCATCAACACCCTTATCTTCTACTCCTTACTCATAGTCTCAGCTTCTTCCACTCCAAACAATCCATTCCCAAAAGAAGCTCTTCCCACCAAATCTGGTTACCTCCCAGTGAGTACCACTTCAGCCTCTGCTATCTTCTATGCTTTCTATGAAGCTCAGAACTCAACCTTACCTCTCTCCCAAACCCCACTTCTCATTTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGATTGGCAACTTCTATGAGCTTGGACCATGGACTCTCACTGATGAATCACCCCTCACACTTCACCCTAACCCTGGTGCTTGGAACAGGATCTTTGGGCTCCTCTTTCTTGATAACCCCATTGGTTCTGGATTCAGTGTTGCAGCAACCACACAAGATATCCCAACTGATGAAAGCGGTGTTGCAAAGCATCTCTTTGCTGCTATAACAAGGTTTGTTGAGCTTGATCCTGTTTTCAAGAACCGTCCTATTTATATTACCGGGGAAAGTTATGCTGGGAAGTATGTTCCTGCTATTGGATACTATATACTGAAGGCGAATTCGCGGTTGCAGGGTTCTAAGAGAGTGAATTTGGCTGGTTTGGCTATTGGAGATGGGTTGACTGACCCTGTTACACAAGTGGTTACTCATGCTGTTAATGCTTATTATATTGGTTTGATCAATGAAAGGCAGAGGGATGAGTTGGAGAAGCTTCAATTGGAAGCAGTTAGGTTAGCTCAGATTGGGAATTGGAGTGCTGCAACCGATGCAAGGAATGTGGTTCTTCGAAAGTTGAGGAATGTGACAGGGTTGGCTACTTTGTTTGATTACACAAGGAAAGCGCCGTATGGTGATGATGTAGTTGATAAATTCTTAAACAATGTGGAAGCCAAGAAGGCCTTAGGGGTGAAGAATGAGTCGCTTGTGTTTGAAGGATGCAGCGACTTGGTTAGCGCCGTTTTACATGCTGATGTGATGAAGAGTGTGAAGTACATGGTAGAGGAATTGGTGAAGAACACTAGGGTGTTGTTATATCAAGGTCAGTATGATATTCAGGATGGAGTGGTTCAAGTCGAGGCGTGGGTGAAGACGATGAAATGGGATGGGATTGGGGAGTATCTGAATGCAGAGAGGAAGATATGGAAGGTGAATGGAGAGCTTGCTGGCTATGTCCAACAATGGAAGTCACTCACTAATGTTGTAGTGTTAGGGGCAGGGCATCTTTTACCTTCTGATCAACCTGTGAGTTCTCAAGCAATGATTGAAGATTGGGTCCTTCAAAAGGGTTTGTTTGAAAGTTTGCAACATCATGAAGATATGAATAGGAATTCATTGTGA 1350 0.4452 MESTTPFFIINTLIFYSLLIVSASSTPNNPFPKEALPTKSGYLPVSTTSASAIFYAFYEAQNSTLPLSQTPLLIWLQGGPGCSSMIGNFYELGPWTLTDESPLTLHPNPGAWNRIFGLLFLDNPIGSGFSVAATTQDIPTDESGVAKHLFAAITRFVELDPVFKNRPIYITGESYAGKYVPAIGYYILKANSRLQGSKRVNLAGLAIGDGLTDPVTQVVTHAVNAYYIGLINERQRDELEKLQLEAVRLAQIGNWSAATDARNVVLRKLRNVTGLATLFDYTRKAPYGDDVVDKFLNNVEAKKALGVKNESLVFEGCSDLVSAVLHADVMKSVKYMVEELVKNTRVLLYQGQYDIQDGVVQVEAWVKTMKWDGIGEYLNAERKIWKVNGELAGYVQQWKSLTNVVVLGAGHLLPSDQPVSSQAMIEDWVLQKGLFESLQHHEDMNRNSL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181766g00002 449 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 418 IPR001563 GO:0004185|GO:0006508
Stsc181766g00002 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 156 181 IPR001563 GO:0004185|GO:0006508
Stsc181766g00002 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 401 414 IPR001563 GO:0004185|GO:0006508
Stsc181766g00002 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 131 IPR001563 GO:0004185|GO:0006508
Stsc181766g00002 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 108 120 IPR001563 GO:0004185|GO:0006508
Stsc181766g00002 449 FunFam Carboxypeptidase 22 436 - -
Stsc181766g00002 449 ProSitePatterns Serine carboxypeptidases, serine active site. 170 177 IPR018202 GO:0004185
Stsc181766g00002 449 Coils Coil 232 252 - -
Stsc181766g00002 449 Gene3D alpha/beta hydrolase 17 441 IPR029058 -
Stsc181766g00002 449 Pfam Serine carboxypeptidase 35 429 IPR001563 GO:0004185|GO:0006508
Stsc181766g00002 449 SUPERFAMILY alpha/beta-Hydrolases 37 431 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181766g00002 Stsc-Chr181766 17918 19538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181766g00002 291 429 Calmodulin-binding Proteins AT2G22960 21.831 1.74e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181766g00002 K09645 - gmx:102663282 674.855