Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181759g00005 ATGTGCAATTATTCCAGAGTGCTTAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCGAAGACTAGGCACCCGAATAATCATATATACCTAGAGAATGGAAGACCGATATATAGTATTATCCAAGAAATAAAAACTGCTCCGCTCAGCATTCTTGATGAGGTTATAAAGAATGTGGCTGGTTCGTCTGTTAACGAGGAGTCTTTTTTAGTTTGGAAAGAAAGTATTTTGCAAAGCAATGGGAGGGCTCAGGGTTATAAGAATAACAGCACCAAACTTTCTGGCATGCCTAATAAGAAGACAAGTCAATCTCTGGAAATTTTGGGTCAGTTGTCTTCTATGCATGTGCCAAATCATTTTGAGCAACATTTGAATGTGAAGCAGACAGCTGATGAGTGGAAACCTGTGGTAAAAAGAAGTGCTGATGGTTGCACCAAAAGAAGGGACAATGATCTACACAGATTACTCTTTATGCCAAATGGACTACCAGATGGTGCTGAATTGGCTTACTATGTTAAAGGACAGAGAATACTTAGTGGTTACAAGCAAGGAAATGGTATAGTCTGTAGTCATTGTGATATAGAGATAAGTCCTTCACAATTTGAAGCCCATGCTGGAATGGCTGCTAGACGCCAACCTTACCGACACATATACACTTCCAATGGATTAACACTTCATGATATAGCTCTTTCTTTGGCAAATGGTCAAAACCTGATGACTGGACATAGTGATGATATGTGTGCAGTATGCGGAGATGGAGGAGATCTGGTTCTTTGCAATCAATGCCCCAGAGCTTTTCATGCAGCATGCTTGGGTTTAGAGTCTGTTCCGGAAACAAGTTGGCATTGTCTAAATTGCAGAGATAATGCTGGTAATGGAAGAGAGTCTTCTATACTGACATCAAGTATGATACGGTTGACAAGGGTTGATAAAACACCTGAGTTTGAAATGGGAGGATGTGTTGTCTGCAGGGAAAATGATTTCAGTGTGTCTAAGTTTGATGAACGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGAGATTGGGCTTTGTGAGTTGGAGGAGCTGCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATTTGGCTCTCCAGAATTCAGTTTTTGCTGGACCTGCCATTATACCAGTCTCCTTGTCAGAACTAATAATTAGGAAACATGAGGAACGGGGATTATTTACCTACGGAGGCATGAATGATATCAAGTGGAGAATCTTAAGTGGAAAGAGCCGTTATCCGGAGCATTTGCCATTACTTTCTCGCGCCGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTTGCAACATCTGGACGTGATCTGATTCCCGTTATGGTCTACGGGAGAAATATTTCTGGCCAAGAATTTGGAGGGATGTATTGCATTGTTCTAATTGTCAATTCTGTCGTTGTATCTGCTGGGCTGCTTAGGATTTTTGGTAGTACTGTTGCTGAGCTTCCACTGGTTGCTACTAGCAGAGAACATCAAGGAAAGGGCTATTTCCAAGTGTTATTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTCAATGTAGAAAAGCTGGTGCTTCCTGCAGCTGGGGACGCAGAGTCAATTTGGACTAAAAAGCTAGGCTTCCGGAAGATGAGTGAAGATCAGTTATCCAAATATCTTAAAGAGGTGCAGCTCACCCTGTTCAATAAAACTTCAATGCTGGAGAAGAGAGTGCAGCTTGCAATAGAATGA 1773 0.4185 MCNYSRVLSAYEFEQHAGAKTRHPNNHIYLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEESFLVWKESILQSNGRAQGYKNNSTKLSGMPNKKTSQSLEILGQLSSMHVPNHFEQHLNVKQTADEWKPVVKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQRILSGYKQGNGIVCSHCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLMTGHSDDMCAVCGDGGDLVLCNQCPRAFHAACLGLESVPETSWHCLNCRDNAGNGRESSILTSSMIRLTRVDKTPEFEMGGCVVCRENDFSVSKFDERTVIICDQCEKEYHVGCLREIGLCELEELPKDKWFCCDDCNRIYLALQNSVFAGPAIIPVSLSELIIRKHEERGLFTYGGMNDIKWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVATSGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGSTVAELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKYLKEVQLTLFNKTSMLEKRVQLAIE 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181759g00005 590 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 474 560 IPR016181 -
Stsc181759g00005 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 377 IPR013083 -
Stsc181759g00005 590 CDD PHD1_AIRE 245 285 - -
Stsc181759g00005 590 SMART PHD_3 245 286 IPR001965 -
Stsc181759g00005 590 SMART PHD_3 318 375 IPR001965 -
Stsc181759g00005 590 Pfam PHD-finger 245 286 IPR019787 -
Stsc181759g00005 590 ProSitePatterns Zinc finger PHD-type signature. 319 374 IPR019786 -
Stsc181759g00005 590 SUPERFAMILY FYVE/PHD zinc finger 241 289 IPR011011 -
Stsc181759g00005 590 ProSiteProfiles Zinc finger PHD-type profile. 316 377 IPR019787 -
Stsc181759g00005 590 ProSiteProfiles Zinc finger PHD-type profile. 243 288 IPR019787 -
Stsc181759g00005 590 FunFam PHD finger family protein 417 584 - -
Stsc181759g00005 590 ProSitePatterns Zinc finger PHD-type signature. 246 285 IPR019786 -
Stsc181759g00005 590 SUPERFAMILY FYVE/PHD zinc finger 316 372 IPR011011 -
Stsc181759g00005 590 Gene3D - 416 584 - -
Stsc181759g00005 590 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 418 577 IPR000182 GO:0016747
Stsc181759g00005 590 PANTHER AUTOIMMUNE REGULATOR 2 584 - -
Stsc181759g00005 590 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 233 311 - -
Stsc181759g00005 590 Pfam Tify domain binding domain 2 42 IPR032308 -
Stsc181759g00005 590 Pfam Tify domain binding domain 179 228 IPR032308 -
Stsc181759g00005 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 315 IPR013083 -
Stsc181759g00005 590 FunFam PHD zinc finger protein 317 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181759g00005 Stsc-Chr181759 28127 35619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181759g00005 2 585 PHD Transcription Factor Family AT3G53680 60.427 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc181759g00005 TDBD 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181759g00005 - - gmx:100808999 1051.97