LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181756g00003	ATGGGAAAGATAAATAATTATGCTTGCTGCATTATTATTCAATACTATTGTCTCATACTCTTAACGGTTGCTGATTTTGATCAGCCTCTCCTAGGAGGAAAGAAATTGATCATTGGGATACCCTTCAAAACTGGTTTCACTGAATTTGTTGAAGCCAAGCTGGATCCAACAACACACCAATTGGTCCAAGCCACTGGCTACTCCATTGATATCTTCCATGCCACCAAGGACTTTATCTCAACCTACTACGGTTTCAATGTCTCCTACGAGTTTCAGCCATTCATCAATAATGAGACGGGTCTAAGTGCTGGCTCTTATGACAAACTTGTTGAACAGGTTTACAATCACACGTATGATGTGGTGGTGGGAGACGTATCAATTGTGGGTCTGAGATCGAGATATGTGGATTTTACTTTACCGTATGCGGAGTCAGGTGTGAGGATGCTGGTTCGAGTTGGGAATGGCGGCGGCAACCGCCACCTAAACATGTGGATATTTCTGCTGCCATTTAGTTGGGATCTATGGTTGTCCATCATTCTAGCCTGTGCCTTCATAGGAGCTTCAATAACATTCATGGAACGTCGTAACATACATAATAATAATAATCATCATCATCATCATCAAGAACCTTCTTCACAAGGCTCTCCACCTTCCCATCAACAACAATTCAAAGGGATATCAATAATATGGCTTCCTATTACTCAACTCTTCCTCCCTCAGAGAGAATCGGTAGGGAAGAATTGCTCCAAGTTTGTATTGGTGGTATGGTTGATATTGGGGTTTGTGTTGATGCAAAGTTACACAGCAAACTTGTCATCCATGTTGACATTGGATCAATTGCAGCCAACATATCCAAGTGTGGATGATTTGAGAACAAATGGTAACAACATAGGGTACCCAATGGATTCCTATCTATCTGAGGTGCTGGTGGACAAATTCAAATTCAATAAATCAAAGCTAAAGAATATGACAAAAATGGAAGATTATCAGAAGGCTTTAGACAAAGGAACCCGAAACGGTGGCGTTGATGTTATATTTGAGGAGATACCATACATCAAGATGTTCATCAAAAAATATGGTTCTAACTATATGATGGTTGGACCTCACTATCGTACTGATGGACTTGGCTTTGCATTTCCAATTAACTCCAACTTAACGTCTTACTTTTCAAGAGCTATATTGAACGTTACCCAGAATGATAGCTTTATGCAACCGATTGAGCGGCAGTATTTTGGAAGCAGTGACTATGACTTCGAAGATGATTCATATGAATTATTATCAACGTCAACGTCATCAGATACTCCTAGCCTTAACTCAGAGAGTTTTGCGGGGTTGTTTCTCATCACAGGAGTTGCCACATTTTTAGCTTTGGTTGTATCAGAAAGCAATATTTGGAGAAAACCAGTAACACTAGCCAAAGTGTACAGCCAAAGGTTTCTTTTCTCTCCTAGTTGGACAAAATCTAAGCAATCCATGGATGATGGTTCAACAAATAAAGGGAATAAAATATGTTGTGTCAGTGAACCAAATAGCATTCCTGAAAGTCCGTCAAGGTTTCCAGATTCTAATGTAGTTCTAGACACAGTTGTATAG	1593	0.3986	MGKINNYACCIIIQYYCLILLTVADFDQPLLGGKKLIIGIPFKTGFTEFVEAKLDPTTHQLVQATGYSIDIFHATKDFISTYYGFNVSYEFQPFINNETGLSAGSYDKLVEQVYNHTYDVVVGDVSIVGLRSRYVDFTLPYAESGVRMLVRVGNGGGNRHLNMWIFLLPFSWDLWLSIILACAFIGASITFMERRNIHNNNNHHHHHQEPSSQGSPPSHQQQFKGISIIWLPITQLFLPQRESVGKNCSKFVLVVWLILGFVLMQSYTANLSSMLTLDQLQPTYPSVDDLRTNGNNIGYPMDSYLSEVLVDKFKFNKSKLKNMTKMEDYQKALDKGTRNGGVDVIFEEIPYIKMFIKKYGSNYMMVGPHYRTDGLGFAFPINSNLTSYFSRAILNVTQNDSFMQPIERQYFGSSDYDFEDDSYELLSTSTSSDTPSLNSESFAGLFLITGVATFLALVVSESNIWRKPVTLAKVYSQRFLFSPSWTKSKQSMDDGSTNKGNKICCVSEPNSIPESPSRFPDSNVVLDTVV	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181756g00003	530	Gene3D	-	162	327	-	-
	Stsc181756g00003	530	Gene3D	-	30	161	-	-
	Stsc181756g00003	530	Pfam	Bacterial extracellular solute-binding proteins, family 3	64	412	IPR001638	-
	Stsc181756g00003	530	SMART	GluR_14	35	413	IPR001320	GO:0015276\|GO:0016020
	Stsc181756g00003	530	PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	33	466	IPR015683	-
	Stsc181756g00003	530	Pfam	Ligand-gated ion channel	413	452	IPR001320	GO:0015276\|GO:0016020
	Stsc181756g00003	530	MobiDBLite	consensus disorder prediction	199	220	-	-
	Stsc181756g00003	530	SUPERFAMILY	Periplasmic binding protein-like II	15	413	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181756g00003	Stsc-Chr181756	17424	19489	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181756g00003	33	463	Ion Channels	AT2G29120	38.283	4.45e-73	248

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181756g00003	K05387		-	aip:107641909	810.446