Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181756g00002 ATGGCTAACAAGAGGTTGTCATACGCTGTGGCATGGGTTGTTATGATGTTTTGGGTTGCTTGGTCGATGGAAGAAACAGCAGAAGTGAAACTACGAGTAGGGGTGCCGAAGAAAGATGGTTTCACGCAATTCGTGAAGGTAGTATGGGATGATGATGAGCACAAGTACAATGTCACTGGATATTGCATGGATGTTTTCCATGCCGTATTAAGCATCTTACCTTTCAATGTTTCACTCCAAATTGAACCTTATGTTAATCAATCAGGACACAGCGCTGGAACATACAATCAACTTGTACAACAAGTCCCCCAAAAGTATGATATTGTGGTAGGGGATATTACGATACTGGCGAACCGTTCAAATTATGTTGATTTCACGCTGCCGTATACAGATTCAGGGGTTCAAATGGTTGTAGCAGCTCAGCAGGGGAGGGTACAAACCATGTGGACATTTATGAAACCCTTCAGCTGGGATCTTTGGCTAAGCATACTTCTCATCTCTATCTTCATAGGTTCTGTCATACTCATCATGGAAAGGAAGGTAATCAACAATTCTTCTCTGCCTTCTCAACACCCTTCCCCAAATCCAAACCAACAACAACGGCTAACCCCTATCAACTTCTTATGGCTTCCAATTTCTCAAGCCGTTCTTCCTGAAAGAGAGGGAGTAGTGAAGAACTGTTCGAGGTTTGTGTTGATGGTATGGCTTCTGTTGGCGTTTGTGCTGATGCAAAGCTACACGGCGAGCTTAACCACCATGTTGACGGTGGAGCAGCTTCAGCCGAGTTTTCTGAGCGTGAATGATCTACGGGAAGGGGATTACTATGTTGGATACCAAGCAGAATCGTTCGTTTATGATTTGTTGGTACAGAAGTGGAAATTCAACTCTTCCAAGCTGAGGGCGTATAGCAGCATTTCTGAATATCACCACGCTTTGAAGATTCGAAACCGTGGAGGAGGTGTTTCCGCCATAGTGGATGAGCTTGCCTACCTTAAACTCTTCATTCAAAAATATGGATCTAATTACATGATCGTAGGTCCCACCTATCGAACTGATGGCTTTGGTTTTGCATTTGCAAGAAACTCTAGTCTTACAGCTGCGTTTTCAAGAGGAATCCTGAACGTGAGTGAGAGTGAGGAATTGGAGAAGATTGAGGAAAAATACTTTGGGAAGATTATGAATAATAATGGATGGGAAGACCAAACTGATGGTTCATCAACATCGTCGTCATCGTCTTCTTCTCCGAGTAGTCTGACTCTTTATAGCTTTTCAGGGCTGTTCCTGATAACGGGGATTGCTACTTTGTTGGCGTTGCTTGTGTCGGAGACAGTGATTTGGAGAAGACCCATTTCCATGGCCAGAGAGTATAGTCGCAAATATTTGTTCCGCACTTCTTCTTCTTCACAAACTCAACCAGCAAGTAGTGATGATGATTCTTCAACGCATCGTCATGGAATGGAATCCTCCGTTTAA 1473 0.4352 MANKRLSYAVAWVVMMFWVAWSMEETAEVKLRVGVPKKDGFTQFVKVVWDDDEHKYNVTGYCMDVFHAVLSILPFNVSLQIEPYVNQSGHSAGTYNQLVQQVPQKYDIVVGDITILANRSNYVDFTLPYTDSGVQMVVAAQQGRVQTMWTFMKPFSWDLWLSILLISIFIGSVILIMERKVINNSSLPSQHPSPNPNQQQRLTPINFLWLPISQAVLPEREGVVKNCSRFVLMVWLLLAFVLMQSYTASLTTMLTVEQLQPSFLSVNDLREGDYYVGYQAESFVYDLLVQKWKFNSSKLRAYSSISEYHHALKIRNRGGGVSAIVDELAYLKLFIQKYGSNYMIVGPTYRTDGFGFAFARNSSLTAAFSRGILNVSESEELEKIEEKYFGKIMNNNGWEDQTDGSSTSSSSSSSPSSLTLYSFSGLFLITGIATLLALLVSETVIWRRPISMAREYSRKYLFRTSSSSQTQPASSDDDSSTHRHGMESSV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181756g00002 490 Pfam Bacterial extracellular solute-binding proteins, family 3 57 391 IPR001638 -
Stsc181756g00002 490 Gene3D - 332 396 - -
Stsc181756g00002 490 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 463 IPR015683 -
Stsc181756g00002 490 Pfam Ligand-gated ion channel 392 433 IPR001320 GO:0015276|GO:0016020
Stsc181756g00002 490 Gene3D - 24 148 - -
Stsc181756g00002 490 SUPERFAMILY Periplasmic binding protein-like II 10 391 - -
Stsc181756g00002 490 Gene3D - 149 300 - -
Stsc181756g00002 490 MobiDBLite consensus disorder prediction 465 490 - -
Stsc181756g00002 490 CDD GluR_Plant 30 375 - -
Stsc181756g00002 490 SMART GluR_14 30 391 IPR001320 GO:0015276|GO:0016020
Stsc181756g00002 490 FunFam Glutamate receptor 2.7 26 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181756g00002 Stsc-Chr181756 12949 14863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181756g00002 20 440 Ion Channels AT5G11210 35.934 2.56e-85 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181756g00002 K05387 - gmx:100807817 495.738