Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181753g00001 ATGAGACCAGGCTCCAATCTTGGCTATGCATTTCTTCTTCTTCTTACTCTTCTTTTCCTTTGTAATCACACTTGTTCTTCACAAAAGGCTTGTCCCCTCTGCGGCTCTATGCAAGTTCCTTATCCATTAAGCACACAATCCAGTTGTGGCGATCCATATTACAAGCTACGCTGTGATCAGCAATCTGAAAAGCTCTACTTTGACACACTCAACGGAAGTTCCTATTTAGTGCTAAAAATCATGTCCTCCATTCAACGCATGGTGGTTCAGCCAGCACCGTGGCTATCTGGCACATCATGTGTCACACAAGACATGCCAGTTAGCAACGGTCTCTGGCTGAACCAATCACTTCCTTTCAACATAACTTCTTCAAATACCATTTTCCTCTTCAACTGCTCGCCTCGCCTCTTGGTCTCTCCCCTCAACTGCTCTGCCTCCAGCATCTGCCACCAATACTTGGACAGCTCCGGCCGTGTTGGAAAAACACAAGCACTTGATTGTGCAAGTGGAATCCACCCTTGCTGTACTTTTGTTGCTGGTGGAAACCCTTCAGCTTACAAGATTCGCCTCCACAATTCCGGCTGCAAAGCTTTCAGAAGCATCCTCCATTTGGATGAGGATAAGCCTCCAAATCAATGGGAAGAAGGCCTAGAAATTCAATGGATTCCACCACCAGAACCAGTATGCAACAGACAACAAGATTGCTCCGGAGACTCCAAGTGTTCGCGGGCGAAAAATGGACTTCTTCGCTGTCTTTGTAACAAGGGACACCAATGGGACCCTTATGCAGCAACATGCTTAAGGCACAACAGAAACTCCAAATTGAAAACCAGCATAGTAATCTCAATTGTTGTTACCATCTTTTTCTCTCTAGCTATAGTTCTTGTTATGATCACAAAATCCTGCAAAATCTATAGCTACATGGAGAAGAATAAGAATAAGAAGAAGGACAAGGAAACAGAGAATGTGTTGAAATCAAGCACTGGTGAGAAGCCTTCTAGAATGTTCCAGCTGAAAGAAGTGAAGAAGGCAACAAATTCTTTCTCCAAAGACAGGATTCTAGGGAGTGGTGGATTTGGTGAAGTTTATAAAGGTGAACTCCAAGATGGAACAATGGTGGCTGTGAAGAAAGCAAGAGTTGGAAACCTAAAAAGCACACAACAAGTTCTCAACGAAGTTGCAATTCTCTCACAGGTGAATCACAAGAATCTGGTGAGACTATTGGGTTGTTGTGTGGAAGAATCAGAGCAGCCTTTGATGATCTACGAGTACATCTCGAACGGAACACTGTATGATCATCTTCACGGAAGGTATCGAAGCTTCTTGGATTGGGAAACAAGGCTGAAAGTGGCGCTTCAGACGGCGGAGGCCTTGGCCTACTTGCATTCCGCCGCGCACACTCCGATCTACCATAGGGATGTTAAGTCCACTAACATTCTTCTGGACAATGAGTTCAATGCTAAAGTATCCGATTTCGGGCTATCGAGGCTGGCTAGCCCGGGGCTGAGCCATGTTTCGACGTGTGCTCAAGGAACCGTTGGATACTTAGATCCAGAATACTACAGAAACTATCAGTTAACAGATAAGAGTGATGTTTATAGCTATGGAGTGGTGTTGTTGGAGCTTTTGAGTTCTGAGAAAGCTATTGATTTTAACAGAGATCCGGATTGTGTGAACCTGGTTGTTCATGTGAGCCAGCATGCAAGCAATGGAACACTGCTGATGGAGGTTGTGGATCAGAGGCTTGTTTGCCAGGAGAGGTTTGGTGAGAGCATAAGAATGTTCTCGGAGCTTGCACTGGATTGCTTGAGGGAGAAGAAAGGTGAAAGGCCTAGCATGAAGGATATTGTTCAGCGCCTAATTTCTGTACTCAAGGTTATGGCTCAAGAGAGGAATAATAATGTTAATGTTAATTAG 1917 0.446 MRPGSNLGYAFLLLLTLLFLCNHTCSSQKACPLCGSMQVPYPLSTQSSCGDPYYKLRCDQQSEKLYFDTLNGSSYLVLKIMSSIQRMVVQPAPWLSGTSCVTQDMPVSNGLWLNQSLPFNITSSNTIFLFNCSPRLLVSPLNCSASSICHQYLDSSGRVGKTQALDCASGIHPCCTFVAGGNPSAYKIRLHNSGCKAFRSILHLDEDKPPNQWEEGLEIQWIPPPEPVCNRQQDCSGDSKCSRAKNGLLRCLCNKGHQWDPYAATCLRHNRNSKLKTSIVISIVVTIFFSLAIVLVMITKSCKIYSYMEKNKNKKKDKETENVLKSSTGEKPSRMFQLKEVKKATNSFSKDRILGSGGFGEVYKGELQDGTMVAVKKARVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVEESEQPLMIYEYISNGTLYDHLHGRYRSFLDWETRLKVALQTAEALAYLHSAAHTPIYHRDVKSTNILLDNEFNAKVSDFGLSRLASPGLSHVSTCAQGTVGYLDPEYYRNYQLTDKSDVYSYGVVLLELLSSEKAIDFNRDPDCVNLVVHVSQHASNGTLLMEVVDQRLVCQERFGESIRMFSELALDCLREKKGERPSMKDIVQRLISVLKVMAQERNNNVNVN 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181753g00001 638 SUPERFAMILY Protein kinase-like (PK-like) 324 620 IPR011009 -
Stsc181753g00001 638 CDD STKc_IRAK 354 620 - -
Stsc181753g00001 638 Pfam Protein tyrosine and serine/threonine kinase 350 620 IPR001245 GO:0004672|GO:0006468
Stsc181753g00001 638 Pfam Wall-associated receptor kinase galacturonan-binding 33 89 IPR025287 GO:0030247
Stsc181753g00001 638 SMART serkin_6 348 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181753g00001 638 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 321 424 - -
Stsc181753g00001 638 ProSiteProfiles Protein kinase domain profile. 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181753g00001 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Stsc181753g00001 638 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 626 IPR044652 GO:0004672
Stsc181753g00001 638 FunFam Wall-associated receptor kinase-like 20 425 633 - -
Stsc181753g00001 638 Gene3D Transferase(Phosphotransferase) domain 1 425 637 - -
Stsc181753g00001 638 Gene3D Phosphorylase Kinase; domain 1 307 424 - -
Stsc181753g00001 638 ProSitePatterns Protein kinases ATP-binding region signature. 354 377 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181753g00001 Stsc-Chr181753 6678 8594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181753g00001 9 630 Receptor kinase-like Gene Family AT5G02070 45.758 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc181753g00001 PK_Tyr_Ser-Thr 6.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181753g00001 - - gmx:100804678 955.281