Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181751g00003 ATGGGTTGCATATCGTCCAAGAGTTCTGCAGCCGTTGATGACAGCAGGGAAGGTATGAAGAGGAAATTGGCATCATCCTCATCAAGCAAAAGGGTATCATCAAATATGATTGTTCCAAGGTTGAATTCTTCTAGAAGAGTTGAGGATAATAATAAGGTTTTGGATGGTGTTGGGTTCAAGAATAAAATAGAGTTGAGTGGTGTGCTTGATCATCATCATGGAATTGGAAGAGTTCCAAAGGCTTCAATGGGAGAGCAAGTTGCAGCAGGGTGGCCCACATGGCTTTCTTCTGTTGCTGGTGAAGCTATCAGAGGATGGATACCTAGGAGTGCTAATACTTTTGAGAAGTTCCATAAAATTGGCCAAGGAACTTATAGTACTGTTTATAAAGCTCGTGATATAACTCACCAAAAGATAGTTGCCTTGAAGAGAGTTCGTTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTCATTCTGCGCAGGCTTGATCATCCGAATGTAATAAAGTTGGAGGGTTTGATAACAGCGCCAACATCTCGCAGCTTGTACCTTGTTTTTGAATATATGGAACATGATCTTACTGGACTGGCAGCAAATCCTGCCATTAAGTTTTCTGAACCACAGGTTAAATGCTACATGAAGCAGCTTCTTAGTGGATTGGATCATTGTCATAGCCATGGTGTCCTCCACCGAGACATAAAGGGCTCAAATCTTCTCATTGACAATAAAGGCATCTTAAAGATTGCAGATTTTGGCTTGGCAAATTTTTTAGACCCCCATCATAGTGTTCCATTGACCAGCCGTGTTGTAACTCTGTGGTATAGACCACCGGAACTTTTACTCGGAGCATCTCATTATGGAGTTGCAGTGGATTTGTGGAGCACTGGTTGCATTCTTGGAGAATTATATTCCGGCAGGCCCATATTGCCTGGAAAAACTGAGGTTGAGCAATTGCATAAGATTTTTAAACTTTGCGGATCACCATCCGAGGACTACTGGCGCAAATTAAGGTTGCCACATTCAACGGTATTCAGGCCGCCGCACCATTATAGGCGATGTATTACAGACACATTTAAGGAATGTCCATCTGCTGCCGTGAGGCTTATAGAGACCCTACTTTCTGTTGATCCTGCACACCGAGGAACGGCAGCCGCTGCTCTAAAGAGTGATTTCTTTTCATTGGAACCCCTTGCTTGTGATCCATCAAGTTTACCAAAATATCCTCCTAGCAAAGAGATTGACTCTAAAATCTTGGATGAGGCAACAAGAAGGCGAGGAGCTGTTGGGGGAAAGCAGCAAAAATCTGGATCAAGAGTCAGACAGGATAAAGATCATTCTTTTGTCTCATCAAAAGACAATGTTGACTCCCACATGACAGTGCAGCAGGGGCAACATCGTTCAAGCTCAAGCCAGAGTGGATTGTTAAACTCTCAAGGCAAACCGGTGTCTGGATATTTTGTGTTTCCACACAACCAGTCAAATGACACTAAAGAAATGAAAAATGACTTCTCTGGACCTCTTAATCAGAGGCCTTCGCATTCAGGTCCATTAGTTCCGGCCTTTGCCTGGGAAAAGGCTAGAAATGAAGTTGGCAACCAGCTTTCTGGATCAAACAAAGCCAATCTTTCAAAAATGTCTGGTTTAGTGGCATATAGGACTGCATTGTCTCAGGATAAAGAACAGAAACCAGTTCCCTTGAAGTCGAAGAAAACAAGTCAACTACAACAATCTTTTGGTTCAACTAATGGTGGTTCAGAAATAAGGAGGAGGCATGATAGAGCACGCATGTCTCAGAGAATCGATATCAGTCAACTTGAAGAAGGGAAAATCCCCACAGAAAATTTAATTCAGGATGGATGCGAGTCTGCGGGAAACAACAAAATCTATCTCTCTGGTCCCTTGGTTTCATCAAACAATGTAGATCAGATACTCAAAGAGCATGATAGAAAGATCCAAGAATATTCAAGGAGATTAAGAAACGATAGGTCTAAAGGTGACAAGAATCATGCAAAGTGA 2034 0.4233 MGCISSKSSAAVDDSREGMKRKLASSSSSKRVSSNMIVPRLNSSRRVEDNNKVLDGVGFKNKIELSGVLDHHHGIGRVPKASMGEQVAAGWPTWLSSVAGEAIRGWIPRSANTFEKFHKIGQGTYSTVYKARDITHQKIVALKRVRFDNLDPESVKFMAREILILRRLDHPNVIKLEGLITAPTSRSLYLVFEYMEHDLTGLAANPAIKFSEPQVKCYMKQLLSGLDHCHSHGVLHRDIKGSNLLIDNKGILKIADFGLANFLDPHHSVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILGELYSGRPILPGKTEVEQLHKIFKLCGSPSEDYWRKLRLPHSTVFRPPHHYRRCITDTFKECPSAAVRLIETLLSVDPAHRGTAAAALKSDFFSLEPLACDPSSLPKYPPSKEIDSKILDEATRRRGAVGGKQQKSGSRVRQDKDHSFVSSKDNVDSHMTVQQGQHRSSSSQSGLLNSQGKPVSGYFVFPHNQSNDTKEMKNDFSGPLNQRPSHSGPLVPAFAWEKARNEVGNQLSGSNKANLSKMSGLVAYRTALSQDKEQKPVPLKSKKTSQLQQSFGSTNGGSEIRRRHDRARMSQRIDISQLEEGKIPTENLIQDGCESAGNNKIYLSGPLVSSNNVDQILKEHDRKIQEYSRRLRNDRSKGDKNHAK 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181751g00003 677 FunFam probable serine/threonine-protein kinase At1g54610 197 438 - -
Stsc181751g00003 677 MobiDBLite consensus disorder prediction 442 457 - -
Stsc181751g00003 677 MobiDBLite consensus disorder prediction 458 485 - -
Stsc181751g00003 677 Pfam Protein kinase domain 114 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181751g00003 677 FunFam probable serine/threonine-protein kinase At1g54610 101 196 - -
Stsc181751g00003 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Stsc181751g00003 677 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Stsc181751g00003 677 MobiDBLite consensus disorder prediction 429 520 - -
Stsc181751g00003 677 MobiDBLite consensus disorder prediction 562 601 - -
Stsc181751g00003 677 MobiDBLite consensus disorder prediction 493 517 - -
Stsc181751g00003 677 Gene3D Phosphorylase Kinase; domain 1 101 196 - -
Stsc181751g00003 677 ProSiteProfiles Protein kinase domain profile. 114 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181751g00003 677 PANTHER CELL DIVISION PROTEIN KINASE 112 403 - -
Stsc181751g00003 677 SMART serkin_6 114 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181751g00003 677 Gene3D Transferase(Phosphotransferase) domain 1 197 435 - -
Stsc181751g00003 677 MobiDBLite consensus disorder prediction 573 590 - -
Stsc181751g00003 677 SUPERFAMILY Protein kinase-like (PK-like) 107 399 IPR011009 -
Stsc181751g00003 677 CDD STKc_CDK9_like 114 398 - -
Stsc181751g00003 677 Coils Coil 650 670 - -
Stsc181751g00003 677 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181751g00003 Stsc-Chr181751 10761 14578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181751g00003 106 439 Core Cell Cycle Gene Families AT5G10270 48.857 1.11e-109 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc181751g00003 Pkinase 2.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181751g00003 - K08819 gmx:100775462 916.761