Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181744g00001 ATGATGATAATGATGATGAACATAACGGGTGTTGTCTTAGCAGGATTCTTGGTGGTTTTGTTGCATATTGTGAATGAGCTCTTCTTGAAGCCAAGATCACTGAGATCAAAGCTTCAGAAGCAGGGTATTCATGGACCTTCTCCTCACTTCTACTTTGGTAACATCCCAGAAAAGAACAAGATTCTAGAACAACATCTTCAAGTTCATCATAATTATGTTGTATCTTCACAGCAAGACAAAGACAAAGGTGTTTCTTCTTCTATTATTTCTCACAGGTGGTATTCCAATTTGTTTCCTCATGTTGAAAAGTGGAGAAATCAATATGGTCCAATATACTTGTTTTCTTCTGGGAATGTAGAGTGGTTGGTGGTGTCTGATATAGAAATGGTGAAAGAAATCACCCTTTACACATCTGTGAATCTAGGGAAGCCTTCTCTTAAATCCAGAGAATTAGGGCCACTCTTAGGTCAAGGTATATTGTCATCAAGTGGACCAATTTGGGTTCATCAGAGGAAGATCATTGCTCCTTCATTATACCTTGATAAGGTCAAGGAAATGGTTAACTTGATTGTTCAATCCACAAATATAACGCTCAAGTCTTGGGAGAGTAGACTCAAGGATGAGGGAGAAGCTCTGGAGCTTAGAATCGACGACGATTTGCGAAGCTTGTCAGCAGACATAATCGCAAGAGCTTGTTTCGGGATCAATTATGTCGAAGGAAATGAAATATTTTCAAAGCTTAAGGCTCTTCAAAACCTCTTGTCTGGAAATGATGCAGGAATTCCAGGCTTTCGATACTTGCCAATTAAAAGAAATAGAGATATGTGGAGATTGGAGAAAGAGGTAAACTCCATGATATCGAAGATCATAAACGAACGCTTACAGCAGGATGCAGAAGAGCAAGATCTTTTGCAAATGATACTTGAAGGTGCAAAGAGTTGTGAGGGAAGTGATAGCATCTTATCAGATTCTGCATCTCGCGACCGGTTCATAATAGATAATTGCAAGAACATATTCTTTGCTGGACATGAGAGTACTGCAATCACAGCATCATGGTGCTTGATGTTGTTAGCCATACACCAAGATTGGCAAGATCACGTTAGGGCCGAGGTTCTTGAACTTTGTGGCAACCATGCCCCGGATGCAAGCATGCTTAGAAAAATGAAGATGCTGAACATGGTGATTCAAGAGACAATGCGGCTTTATCCAGCGGCGGCGTTTGTTTCAAGATCAGCATTGCAAGACATTAATTTGAAAGGTATCCTAATTCCAAAAGGAATGAACATTGAGATTTCAGTACCAATACTAATGCAAGACCCTGAGATTTGGGGTCATGATTCACACAAGTTCAACCCAGAAAGATTCTCAAATGGGATTCTTGGAGCTTGTAGATTCCCACAAGCATATGTGCCATTTGGATTAGGGGCTAGGGTTTGTGCTGGACAACACTTAGCCATGACTGAATTGAAGGTGATTTTGTGTCTCATTTTGATCAAGTTTAGGTTCTCTTTGTCACAGAGTTATTGCCATTCACCTATCTTCCGTTTGGTTATAGAACCTGGCCATGGTGTTATTCTAAAGATCACAAGAATTTAA 1596 0.4004 MMIMMMNITGVVLAGFLVVLLHIVNELFLKPRSLRSKLQKQGIHGPSPHFYFGNIPEKNKILEQHLQVHHNYVVSSQQDKDKGVSSSIISHRWYSNLFPHVEKWRNQYGPIYLFSSGNVEWLVVSDIEMVKEITLYTSVNLGKPSLKSRELGPLLGQGILSSSGPIWVHQRKIIAPSLYLDKVKEMVNLIVQSTNITLKSWESRLKDEGEALELRIDDDLRSLSADIIARACFGINYVEGNEIFSKLKALQNLLSGNDAGIPGFRYLPIKRNRDMWRLEKEVNSMISKIINERLQQDAEEQDLLQMILEGAKSCEGSDSILSDSASRDRFIIDNCKNIFFAGHESTAITASWCLMLLAIHQDWQDHVRAEVLELCGNHAPDASMLRKMKMLNMVIQETMRLYPAAAFVSRSALQDINLKGILIPKGMNIEISVPILMQDPEIWGHDSHKFNPERFSNGILGACRFPQAYVPFGLGARVCAGQHLAMTELKVILCLILIKFRFSLSQSYCHSPIFRLVIEPGHGVILKITRI 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181744g00001 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 472 481 IPR017972 GO:0005506|GO:0016705
Stsc181744g00001 531 PRINTS E-class P450 group I signature 223 241 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 PRINTS E-class P450 group I signature 392 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 PRINTS E-class P450 group I signature 330 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 PRINTS E-class P450 group I signature 105 124 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 PRINTS E-class P450 group I signature 350 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 PRINTS E-class P450 group I signature 469 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 PRINTS E-class P450 group I signature 479 502 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 SUPERFAMILY Cytochrome P450 92 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 PANTHER CYTOCHROME P450 FAMILY MEMBER 24 523 - -
Stsc181744g00001 531 PRINTS P450 superfamily signature 479 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 PRINTS P450 superfamily signature 393 404 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 PRINTS P450 superfamily signature 470 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 PRINTS P450 superfamily signature 341 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 Gene3D Cytochrome P450 28 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181744g00001 531 Pfam Cytochrome P450 96 510 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181744g00001 Stsc-Chr181744 5179 8001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181744g00001 129 528 Cytochrome P450 AT5G24900 45.122 8.20e-127 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181744g00001 K24544 - gmx:100780335 754.592