Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181731g00005 ATGGGGAGGAAGTGTTCTCATTGTGGGAACATAGGGCACAATTCAAGAACTTGCACAACAAAATCACCTATGATGATGATGATGAAAGGAGGAACATCAACAATTAATAATAGTTTTGTAGGGCTTAAGCTCTTTGGGGTTCAGCTTGATATATCTTCTTCTTCTTCATCTTGTTATGTTGCAATGAAGAAAAGTTTTAGCATGGATTCCTTGCCCTCTTCATCTTCTACAACTACTACTACTACTAATTCCTCCTTCTCATCTTCAAGATTAACCATTGATGATAACATCAACATAATCGAAAACAATAATAATAGCTCTGCTCATCATCTTGTTGCTACTGGCTACCTTTCAGATGGTCTGATGGTTCCAGCACAAGAGAGGAAAAAAGGAGTTCCATGGACAGAAGAAGAACACAGAACTTTCCTTGTTGGGCTTGAGAAGCTGGGAAAAGGTGATTGGAGAGGAATATCTAGAAACTATGTGACCACAAGAACTCCAACCCAAGTTGCAAGCCATGCTCAAAAGTACTTTCTTAGATTGGCAACTTTGAATAAGAAGAAGAGACGCTCAAGTCTCTTTGACTTGGTTAGCATAGGCAACAAGAACACAAAAACAACATTTCATCATCATCATCATGATGTTGGTGGCATATCTAATTGCAAATCATCAGGAGATTCACGTGTTCTTATTCATGAGTCAAAATGTGAAGAAGTTGTTGAGAACAAAGACATTGATGATGCCACTTTATCACTTCTAGGGCGCCTTACCCCATTTAAGCAAGAAATCAAATCAGATAATCACCAAAAAACCATTATTAACCATGATAATCATCATCACTATCAACATCAAGGTCAACCATTTTGGCTTCACCATCATCATCAACACTTGAATAATGCTGCTGCTGCTGCTTCTTCTTCAGCAGTGCCTGATTTGGAGCTCACTCTTGCAGCCCCAAAGGAACAAAATAAATCGACATCCCCAAGTTCCTTCTTTTTTGGTCCAATTAGTGTTACTTAA 1020 0.3853 MGRKCSHCGNIGHNSRTCTTKSPMMMMMKGGTSTINNSFVGLKLFGVQLDISSSSSSCYVAMKKSFSMDSLPSSSSTTTTTTNSSFSSSRLTIDDNINIIENNNNSSAHHLVATGYLSDGLMVPAQERKKGVPWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFLRLATLNKKKRRSSLFDLVSIGNKNTKTTFHHHHHDVGGISNCKSSGDSRVLIHESKCEEVVENKDIDDATLSLLGRLTPFKQEIKSDNHQKTIINHDNHHHYQHQGQPFWLHHHHQHLNNAAAAASSSAVPDLELTLAAPKEQNKSTSPSSFFFGPISVT 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181731g00005 339 CDD SANT 133 178 IPR001005 -
Stsc181731g00005 339 ProSiteProfiles SANT domain profile. 134 182 IPR017884 -
Stsc181731g00005 339 SUPERFAMILY Homeodomain-like 127 182 IPR009057 -
Stsc181731g00005 339 FunFam transcription factor MYB1R1 132 183 - -
Stsc181731g00005 339 MobiDBLite consensus disorder prediction 68 88 - -
Stsc181731g00005 339 NCBIfam myb-like DNA-binding domain, SHAQKYF class 129 180 IPR006447 GO:0003677
Stsc181731g00005 339 ProSiteProfiles Myb-like domain profile. 126 178 IPR001005 -
Stsc181731g00005 339 Gene3D - 132 184 - -
Stsc181731g00005 339 SMART sant 130 180 IPR001005 -
Stsc181731g00005 339 PANTHER TRANSCRIPTION FACTOR KUA1 3 292 - -
Stsc181731g00005 339 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Stsc181731g00005 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 182 IPR017930 -
Stsc181731g00005 339 Pfam Myb-like DNA-binding domain 133 178 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181731g00005 Stsc-Chr181731 26569 28632 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc181731g00005 Myb_DNA-binding 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181731g00005 - - adu:107490116 441.81