Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181726g00005 ATGGCGCATCTGGAGTGCACCAATCTGAGGGCACCTCAAACAGGCGAGGGAGATGACTCTCTCTACGTACACCTATGGAAGCTCTGTGCTGGGCCTCTCGTCCATGTTCCCCGCACCGGAGAGAGAGTCTTCTACTTCCCCCAGGGTCACATGGAACAATTGCAGGCATCAACGAATCAGGAGGAATTGAGTCAGCAAATCCCTCATTTCAATCTCCCAAACAAGATACTCTGCCGTGTTGTTCACATTCAGTTGCTGGCGGAACAGGAAACTGATGAAGTTTATGCCCGTATCACTTTGCTTCCAGAACCAGATCAAAAAGAGCCTACAAGCCCTGATCCAAGTCCTGTGGAATCCCAAAGAGAAACGTTTCACTCTTTTAGCAAGATATTAACTCCCTCTGATACTAGCACACATGGAGGATGTTCAGTTCGTCGTATGCATGCCACAGAGTGCCTACCTCCATTGCCATCACCTCCTCCGGATTCGGATGAAAATTCCCCACCACCATCCCAGGAATTGGTGGCCAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCATGTATTAAGAGGTTCACCAAAGAGGCACTTGTTCACTACTGGCTGGAGTACCTTTGTCACTTCCAAAAGACTTGTTGCTGGAGATGCTTTTGTCTTTTTAAGGGGAGAAGATGGGGAAATGAGAGTTGGGATTAGGCGTCTTGCACGGCAGCAGAGCCCGATGCCTTCGTCGGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCTTCTCATGCTGTTATGACTCGCACCATGTTTGTGGTTTACTATAAACCAAGGAGTAGCCAATTTATTATTGGCCTTAACAAATATCTGGAAGCTGTCAAACATAAATTTAGTGTTGGAATGCGTTACAAGATGAGATTTGAAGTGGAAGAATCACCTGAGAGAAGATTTTCTGGTACTATTGTTGGGGTTGGGGATGTATCTCCAGGATGGTCAAACTCTCAATGGCGTTCCTTGAAGGTTCATTGGGATGAGCCAGCAACGTTTCCAAGACCAGAGAGGGTTTCTTCTTGGGAGATTGAGCCTTTTGTGGCTTCTACTGCCTTGACCAAAAGGCCCAGGCATGCTGATCATATTTCATCATCTGAAATTGCTTCCAACCCTCCTGCTTCAGCTTTCTGGTTTCATGGATCATCAATCTCCCATGAACCTACACAGTTAGGTGGTGCTGAAGTCCAAAGCAAGGAAAACCAGGTTGTGTGGTCGTTGAGGCAGAAAGAAACCAATGGAAATCCCATGAATAGCCACTCCAGTAGCTCTCGGGTCCGTATGGAAGGAATATGGTCTAGTTCACCACATGCCAATGTCCCACCAAACCCCCAAAACAACAATGCTGCTGCTAAACAAGGACGCTCTCCTATTTCATCTAAACTAAATGATGATGGATTGACTCATGAAAAAGTTGGAGTAGATGGTAAAAAGAAGACTGAGAATCCCACAAAGATCTTTTTATTTGGAGTTAATTTGAGTAACGACGTAGGTAGTAATGTTTCCCTTCCGGAAAAAGAACAAGCATGCTCTGCCATTCTTCCCATTGGTCCCAAAGAATCTGCCACTGAGGAGGCTCAGAATTCCAACAATTCAGTGTCCGATAAGGAGCAGCAGAACCAGATTATTTCTGATGCATTGCCAACAGAGAAGCCTTGCAAGCTGGCATCCATGAGGACTCGAACTAAGGTGCAAATGCATGGTGTGGCTGTAGGGAGAGCTGTGGACCTAACCATATTGAATGGTTATGAAGAGCTTATAGATGAGCTTGAGAAACTGTTTGATATTGGGGGAGAACTTCGATCTCAGAACAAATGGGCAGTTACTTTTACTGATGATGAAAATGACATGATGCTTGTTGGTGATGATCCATGGCCGGAGTTCTGCAACATTGTGAAACGGATTTACATTTATTCAAGGGAGGATGTGAAGAAGATGAAATACAAGCTCTCCGGGCCTTCGTCGGATTGCGAAGAGACTTTGTTGACGAAGGATGAGACTCAAAAAGTCTCTGCTTAA 2064 0.4549 MAHLECTNLRAPQTGEGDDSLYVHLWKLCAGPLVHVPRTGERVFYFPQGHMEQLQASTNQEELSQQIPHFNLPNKILCRVVHIQLLAEQETDEVYARITLLPEPDQKEPTSPDPSPVESQRETFHSFSKILTPSDTSTHGGCSVRRMHATECLPPLPSPPPDSDENSPPPSQELVAKDLHGFEWKFKHVLRGSPKRHLFTTGWSTFVTSKRLVAGDAFVFLRGEDGEMRVGIRRLARQQSPMPSSVISSQSMHLGVLATASHAVMTRTMFVVYYKPRSSQFIIGLNKYLEAVKHKFSVGMRYKMRFEVEESPERRFSGTIVGVGDVSPGWSNSQWRSLKVHWDEPATFPRPERVSSWEIEPFVASTALTKRPRHADHISSSEIASNPPASAFWFHGSSISHEPTQLGGAEVQSKENQVVWSLRQKETNGNPMNSHSSSSRVRMEGIWSSSPHANVPPNPQNNNAAAKQGRSPISSKLNDDGLTHEKVGVDGKKKTENPTKIFLFGVNLSNDVGSNVSLPEKEQACSAILPIGPKESATEEAQNSNNSVSDKEQQNQIISDALPTEKPCKLASMRTRTKVQMHGVAVGRAVDLTILNGYEELIDELEKLFDIGGELRSQNKWAVTFTDDENDMMLVGDDPWPEFCNIVKRIYIYSREDVKKMKYKLSGPSSDCEETLLTKDETQKVSA 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181726g00005 687 Gene3D - 570 662 - -
Stsc181726g00005 687 SUPERFAMILY CAD & PB1 domains 574 650 - -
Stsc181726g00005 687 Gene3D - 124 235 IPR015300 -
Stsc181726g00005 687 Pfam B3 DNA binding domain 127 234 IPR003340 GO:0003677
Stsc181726g00005 687 MobiDBLite consensus disorder prediction 153 167 - -
Stsc181726g00005 687 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 662 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc181726g00005 687 MobiDBLite consensus disorder prediction 448 493 - -
Stsc181726g00005 687 Pfam AUX/IAA family 556 656 IPR033389 -
Stsc181726g00005 687 ProSiteProfiles PB1 domain profile. 574 657 IPR000270 GO:0005515
Stsc181726g00005 687 Coils Coil 534 554 - -
Stsc181726g00005 687 MobiDBLite consensus disorder prediction 537 555 - -
Stsc181726g00005 687 ProSiteProfiles B3 DNA-binding domain profile. 127 236 IPR003340 GO:0003677
Stsc181726g00005 687 MobiDBLite consensus disorder prediction 150 173 - -
Stsc181726g00005 687 Pfam Auxin response factor 260 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc181726g00005 687 MobiDBLite consensus disorder prediction 448 478 - -
Stsc181726g00005 687 FunFam Auxin response factor 125 236 - -
Stsc181726g00005 687 MobiDBLite consensus disorder prediction 533 555 - -
Stsc181726g00005 687 SMART B3_2 127 236 IPR003340 GO:0003677
Stsc181726g00005 687 MobiDBLite consensus disorder prediction 479 493 - -
Stsc181726g00005 687 Gene3D - 295 367 - -
Stsc181726g00005 687 CDD B3_DNA 125 234 IPR003340 GO:0003677
Stsc181726g00005 687 MobiDBLite consensus disorder prediction 666 687 - -
Stsc181726g00005 687 FunFam Auxin response factor 295 366 - -
Stsc181726g00005 687 SUPERFAMILY DNA-binding pseudobarrel domain 118 263 IPR015300 -
Stsc181726g00005 687 FunFam Auxin response factor 569 662 - -
Stsc181726g00005 687 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181726g00005 Stsc-Chr181726 16837 20905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181726g00005 17 661 B3 DNA Binding Superfamily AT4G23980 53.282 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc181726g00005 B3 5.3e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181726g00005 K14486 - gmx:100820503 862.448