Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181726g00001 ATGGCGAGGCAAAGGCAGCGAGGAGGCATCAACCTTGCGCAGCTTGCAGGATACTACGCCGGCGATGTGACAGTGGTTGAGGAGACAAAGAGAGAGGATGCTGTGAAAGCGATGGTTTACGAGGCGAAGGCAAGGCTTAGAGATCCCGTTTATGGCAGCACTGGAGCTATTTTCCACTTGCAGAAGATGATCGAGGAATTGAAAGAACAGCTAGAATCAATTAGAACTCGAGTATCTGAGCTGCGACGGCAGAAGGAGCACTACTTGTTCATGATGCTTCAACATAACCACAATTATACTACTCCTTATGATCATGAGAATAATAGTAATGACCCTATCTTCCAAGGCTATTATACTACTTTCTCATCAGATCTCGATGACTCATCATTATTTGAATTTCCTGTACAAGAAGAAGGTCATTATATTATTGGATAA 435 0.4345 MARQRQRGGINLAQLAGYYAGDVTVVEETKREDAVKAMVYEAKARLRDPVYGSTGAIFHLQKMIEELKEQLESIRTRVSELRRQKEHYLFMMLQHNHNYTTPYDHENNSNDPIFQGYYTTFSSDLDDSSLFEFPVQEEGHYIIG 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181726g00001 144 Coils Coil 57 84 - -
Stsc181726g00001 144 Pfam Lateral organ boundaries (LOB) domain 25 74 IPR004883 -
Stsc181726g00001 144 ProSiteProfiles LOB domain profile. 1 78 IPR004883 -
Stsc181726g00001 144 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181726g00001 Stsc-Chr181726 4862 5535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181726g00001 26 89 AS2 family AT1G07900 46.875 2.90e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc181726g00001 LOB 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181726g00001 - - ccaj:109796546 121.709