Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181725g00001 ATGGAACCTCTCTCTACAATGTCCCCTCCTACCAACAATAATGGTGGAACCTCATCTTTTGCCAAAACTTGTTTCCATGGGGTTAATGGCATTTCAGGAATTGGTATAGTGTCTATACCATTTGCATTAGCAACAGGAGGTTGGTTAAGCTTGGCATTCCTTTTCATCATAGCTATAGCAGCATGCTACACAGGCTTATTAATCAAAAGATGCATGGATAAAGATTCCACCATTGAATCTCTTCCTGATATTGGTCAAAGAGCATTTGGTGATAAAGGAAGATTATTAGTTAACATTGCAATGAATTGTGAACTTTATTTGGTTATAACAGGCTACTTAATTCTTGAAGGAGATAACTTGAACAAGTTAATATCACACTTTCATGTGGATATTGGAGGATTGAGAATCAGTGGAACACAATGTTTTGTTCTAATTTCAGCACTGATTATTCTCCCAACTGTATGGTTGGAAGATCTAAGCAAATTTCTATCATATGTGTCTGCAACAGGGGCTTTAGCATCAATTATATTTCTGTGTTCATTATTTTGGAATGTTGCAATTGATGGAACAAAACATCATAGCAAAGGAGTGCTCTTTAATTGGAAGGGTGTTCCTGCTGCAGTTAGTTTGTATGCATTTTGCTACAGTTCTCATCCTGTCTTTCCAAGTCTCTACACTTCCATGAAGAACAAACATCAGTTCTCTAATGTTTTGCTGGTGTGCTTCACATTGTGCACTTTAGTATATGCAGCAACAGCAGTTTTAGGATACCTAATGTTTGGATCAGAAGTTCAATCAGAAATAACTTTGAATCTTCCAAAAGAGAAACTCAGTTCAAAAGTGGCAATATACACAACTTTGATTAACCCCATTACCAAATATGCTCTGATGCTTAGGCCAATTGTTGATGCCATAAAAAGCAAGCTTCCACCTCACTACAACAAAAGGCACAAGTTCACACATATACTAATTAGTAGCATCCTACTAGTCTCTACTGTTGTGGTTGCACTCACTGTTCCATTTTTTGGATACCTTATGTCACTGGTTGGTGCATTACTAAGTGTGTCAGCTTCATTCCTAGTGCCATGTGTTTGCTACTTGAAGATTTCTGGAACATACAAGAAATTGGGGTGTGAAATGATCATCAATTACTCTATTTTCTTTGTTGGTACTGCAATTGCTGCCTTTGGAACTTACCAGTCACTCCGACAAATAATTAATAACTTAAAGTTGTAA 1236 0.3697 MEPLSTMSPPTNNNGGTSSFAKTCFHGVNGISGIGIVSIPFALATGGWLSLAFLFIIAIAACYTGLLIKRCMDKDSTIESLPDIGQRAFGDKGRLLVNIAMNCELYLVITGYLILEGDNLNKLISHFHVDIGGLRISGTQCFVLISALIILPTVWLEDLSKFLSYVSATGALASIIFLCSLFWNVAIDGTKHHSKGVLFNWKGVPAAVSLYAFCYSSHPVFPSLYTSMKNKHQFSNVLLVCFTLCTLVYAATAVLGYLMFGSEVQSEITLNLPKEKLSSKVAIYTTLINPITKYALMLRPIVDAIKSKLPPHYNKRHKFTHILISSILLVSTVVVALTVPFFGYLMSLVGALLSVSASFLVPCVCYLKISGTYKKLGCEMIINYSIFFVGTAIAAFGTYQSLRQIINNLKL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181725g00001 411 PANTHER AMINO ACID TRANSPORTER 11 399 - -
Stsc181725g00001 411 Pfam Transmembrane amino acid transporter protein 17 401 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181725g00001 Stsc-Chr181725 790 5075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181725g00001 12 409 Amino Acid or Auxin Permease AAAP Family AT3G28960 55.528 4.78e-159 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181725g00001 K15015 - gmx:100804353 507.294