Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181719g00003 ATGGGGAGGAAGAAGCCCACGGCACGCGACGACGATAACGTCCCTGCTGCATCTCAAGGCGCCGGCAAATCCAAGAAGAAGGTAGTGATCGACGATGACGAGTATGCCATCGGAACTGACCTAGCTGAGGAGCCGCAGCCTGCGCCACCCGAGGAGAAGAAGGCGGCGGCACCACCAGCTGGCAAGAAGAAGGGCAAAAAGGGTAATGCCAAAGGCAAGGCAAAGGGTAAGGATGACGAAGATGATGACGATGATGTGGTAATTGGTGCGGCTGGGGACGATGATGATGATGATGAGGATGCTGGGATTGTGTTTGCTGGGAAGAAGAAGAAGGGTAAATCTAAGAAAGGTGGTGGTGGCAGTGTGTTCGCTGCTGCATCTGGTTTTGGCTTGCTTGGGGATGAGGGTGATGATGGCGGTGATGATGATGAAGATGATGACAAATCTGGGATAACTGGTGATGGTGGCGATCCTGTTGAGGAGGAGGAGGACGAGGACGAGGAGCCAGTGGTTAGTTTTACAGGTAAGAAGAAGCCCTCTAAGGGCTCGAAAAAAGGTGGTGGCAGTGTGTTCAGTGCCTCAGCATTTGATGCTATTGATGATGCTGATAATGATGTTGGGGAGGAGGATGAGCCAGTGGTAAGTTTTTCGGGTAAGAAGAAATCCTCGAAGGGATCGAAGAAAGGTAGTTCATTCTCTGCCTCGGCCTTTGATGCTATTGATGATGGAGAGGTGGTGGTGGATAATGTCGGCGATGAGGATGAACCAGTTATTGCTTTTACCGGGAAGAAGAAGTCTTCTAAAGGTGGCAAGAAGGGTGGTGGTGCTGCATTTTCAGCAGCTAGTTTTGGCGAGGTTGACGATGGGGAGGAGGCTCAGAATGAAAAGGAGGAAGAAGAGGATGGTGAGGACATGGCAATTACCTTCTCTGGTAAGAAAAAGAAGTCATCAAAGTCTTCTAAGAAGGCTTCATTTAGTACAGCTTTTGCCGATGAAGAAGATGCTTCTGTANNNNNNNNNNCTAGAGATGGTGAGGATGAAGACGATGTTTTGGTTGCGTTTTCGGGTAAGAAGAAGTCTTCTAAAAAGAAAAGCAGTGCTAAAACGGGTGATGAAACTGTTGAGCCTGAACAACCTAGTGCTGTAATTAGCAATGCAGATGCTGACAGAAATGTAAATAAAAGTGAAGGAGTCACTGAAACCTCAAAAAATAAGAAGAAGAAGAAAAACAAGAGTGGAAGAACTGCTCAAGAGGAGGAAGATTTAGATGCGATTCTTGCGGAGCTTGGTGAGGCCCCTGCAATTGCTAAACCTTCTGCACCTCAACCTCAGGATGATAAAGTCAAGCAGGATGATAAAGCTCAGCCTGTTTCAGAACCAGGCCCTGCTACTGATGCTGCAGGCGAAAAGGAGGGGGAAGAGGAGACAGTAGAGTCAGCTGCTGCGAAGAAGAAGAAAAAGAAGAAGGAAAAGGAAAAGGAGAAGAAGGCTGCAGCTGCTGCAGCCGCTGGAACTGTAGTAGAAAATGAAGCTAAAGAAGTTAAGGCCGAGCCTGCTGAAGCTAAGAAGAATGACTCAAAGGCCAAAGCAGTTGACAACAAGAAAGTGCCGAAGCATGTTAGGGAGATGCAAGAGGCATTAGCTCGAAGGAAGGAGGCCGAAGAAAGGCAGAAGAAGGAAGAGGAAGAGAGGTTGAGGAGGGAGGAAGAGGAGCGACGAAGGCAGGAGGAACTTGAGAGACAGGCTGAAGAAGCTAGACGCAGGAAGAAGGAAAAAGAAAAGGAGAAGCTCCAGAGAAAGAAGCAAGAAGGTAAACTGCTAACTGGTAAGCAGAAAGAGGAAGCTCGGCGCTTGGAGTTAATGAGGAAGCAGTTTCTTAACAGCACAGGAGGTGCAAATCTCCCGGGTGGGGACTCTGGTGCACCAGCCAAAAGGCCTATATATCAGACAAAGAAGTCGAAATCCACCCATCATCAGCAGAATGGTGCTGCTGTCTCAACAGCTGCTGCCGTTGAGATGGCTGAAAGTGTTGAAGCAAAGGAAAATCAGGAGACAGCTACTGATGCAGGTCCAGACGAACCAGAAAAGGTTGAAGAAACTGTAGTGGAGCAGGTGGAGGAGAAAGTTGAGCCTCCAGAAGCTGCTGAAGACAATGGAGAAGATGAGGATGACGATGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTGAATGCCAAGGGTGCATTTGCTGATGAAGATTCTGAGCCCGAACCGGTTGCCAAAAAGGAGACAAAGACTGCTGTAACCCTGAACAATGCTGCTGCTACAAAGAAAACTATTTCTAAGCCTGTGACAGAAGAAATTGTAGATAGAAAGCTTGTTGCTGACAAGAATAGCTCAGAACCACCAAAATCTGTTTTGCCAAGGGAACCTGCAAAGCCAAAGGAAACACAAAAGTCTTCTGTGCCTCCTAAGCCAATCGAAGAGAACCTCCGTTCTCCAATTTGCTGTATCATGGGGCATGTGGATACAGGTAAAACTAAGCTTCTAGATTGCATTCGAGGTACTAATGTTCAAGAGGGTGAGGCTGGTGGCATCACACAGCAGATTGGTGCAACATACTTTCCTGCGGACAACATACGTGAAAGAACTAAGGAATTGAAAGCTGATGCAAAGCTAAAAGTTCCTGGTCTACTGGTTATTGATACCCCAGGGCACGAATCGTTTACTAACCTAAGGTCTCGGGGTTCAGGGCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCAACAGACAATTGAATCCCTCAATCTATTAAAAATGAGGAATACAGAATTCATTGTTGCCTTGAATAAGGTTGACAGGCTTTATGGGTGGAAAACATGTCGCAATGCTCCAATTATCAAAGCAATGAAACAACAAACCAAGGACGTTCAAAATGAGTTCAATATGAGGCTCGTTCAGATTGTTACTCAACTGAAGGAACAGGGGCTAAATACTGAGTTGTATTATAAAAACAAGGAAATGGGAGAAACGTACAACATTGTACCTACAAGTGCAATAAGTGGTGAAGGAATCCCTGACTTGTTATTATTGTTGGTTCAATGGACCCAAAAAACGATGGCTGAGAAACTTACTTATAGTGATGAAGTGCAGTGTACTGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGCACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGATCAAATAGTTGTCTGTGGAATGCAGGGGCCAATTGTGACGACAATTCGAGCTTTACTCACACCACATCCAATGAAGGAACTCCGTGTTAAGGGTACATTTCTCCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAGATCACTGCCCAGGGACTTGAACATGCTATTGCTGGAACTGGTTTATATGTTGTGAAGCCTGATGATGATTTGGAAGATATTAAAGAATCTGCAATGGAAGATATGCGATCAGTCATGAGCAGGATTGACAGGAGTGGTGAGGGAGTTTGTGTGCAGGCATCTACCCTTGGTTCATTGGAAGCATTGCTGGAGTTTTTGAAAACACCAGAAGTGAATATTCCTGTTAGTGGTATAAGCATTGGCCCTGTGCATAAGAAGGATGTTATGAAGGCAAGTGTAATGCTTGAAAAGAAGCGAGAATATGCTGCTATATTGGCATTTGATGTCAAAGTCACTCCTGAGGCTAGGGACCTTGCAGAAGAACTTGGTGTGAAAATCTTCATTGCTGATATCATATATCATTTGTTTGACCAATTTAAGGCCTATATCGATAACATTAAGGAGGAGAAAAAGAAGGAATCTGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAAATTTTACCAAACTGTGTTTTCAACAAGAAGGATCCAATTGTTTTGGGAGTTGATGTTCTTGAAGGCATTGCGAGGATTGGGACACCAATTTGTATTCCTTCTAGAGAATTCATTGACATCGGCCGCATTGCCTCCATTGAAAATAACCACAAGCCAGTTGATTATGCAAAGAAAGGGCTGAAAGTAGCCATTAAGATTGTTGGTAGCAATCCTGAGGAGCAACAGAAAATGTTTGGGAGGCATTTTGAGATGGATGACGAACTTGTAAGCCATATTTCACGGAGGTCTATCGATATACTCAAAGCTAATTATAGGGACGATCTAAGCACTGAAGAATGGAGGCTTGTTGTGAAACTAAAGAATGTTTTCAAGATTCAATGA 4260 0.4469 MGRKKPTARDDDNVPAASQGAGKSKKKVVIDDDEYAIGTDLAEEPQPAPPEEKKAAAPPAGKKKGKKGNAKGKAKGKDDEDDDDDVVIGAAGDDDDDDEDAGIVFAGKKKKGKSKKGGGGSVFAAASGFGLLGDEGDDGGDDDEDDDKSGITGDGGDPVEEEEDEDEEPVVSFTGKKKPSKGSKKGGGSVFSASAFDAIDDADNDVGEEDEPVVSFSGKKKSSKGSKKGSSFSASAFDAIDDGEVVVDNVGDEDEPVIAFTGKKKSSKGGKKGGGAAFSAASFGEVDDGEEAQNEKEEEEDGEDMAITFSGKKKKSSKSSKKASFSTAFADEEDASVXXXXRDGEDEDDVLVAFSGKKKSSKKKSSAKTGDETVEPEQPSAVISNADADRNVNKSEGVTETSKNKKKKKNKSGRTAQEEEDLDAILAELGEAPAIAKPSAPQPQDDKVKQDDKAQPVSEPGPATDAAGEKEGEEETVESAAAKKKKKKKEKEKEKKAAAAAAAGTVVENEAKEVKAEPAEAKKNDSKAKAVDNKKVPKHVREMQEALARRKEAEERQKKEEEERLRREEEERRRQEELERQAEEARRRKKEKEKEKLQRKKQEGKLLTGKQKEEARRLELMRKQFLNSTGGANLPGGDSGAPAKRPIYQTKKSKSTHHQQNGAAVSTAAAVEMAESVEAKENQETATDAGPDEPEKVEETVVEQVEEKVEPPEAAEDNGEDEDDDEDEWDAKSWDDVNLNAKGAFADEDSEPEPVAKKETKTAVTLNNAAATKKTISKPVTEEIVDRKLVADKNSSEPPKSVLPREPAKPKETQKSSVPPKPIEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPADNIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIIKAMKQQTKDVQNEFNMRLVQIVTQLKEQGLNTELYYKNKEMGETYNIVPTSAISGEGIPDLLLLLVQWTQKTMAEKLTYSDEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTFLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDIKESAMEDMRSVMSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSGISIGPVHKKDVMKASVMLEKKREYAAILAFDVKVTPEARDLAEELGVKIFIADIIYHLFDQFKAYIDNIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDVLEGIARIGTPICIPSREFIDIGRIASIENNHKPVDYAKKGLKVAIKIVGSNPEEQQKMFGRHFEMDDELVSHISRRSIDILKANYRDDLSTEEWRLVVKLKNVFKIQ 1419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181719g00003 1419 Gene3D - 1171 1275 IPR036925 -
Stsc181719g00003 1419 Coils Coil 470 502 - -
Stsc181719g00003 1419 MobiDBLite consensus disorder prediction 510 621 - -
Stsc181719g00003 1419 SUPERFAMILY Translation proteins 1286 1418 IPR009000 -
Stsc181719g00003 1419 Coils Coil 536 607 - -
Stsc181719g00003 1419 FunFam Eukaryotic translation initiation factor 5B 1282 1419 - -
Stsc181719g00003 1419 PRINTS GTP-binding elongation factor signature 895 905 IPR000795 GO:0003924|GO:0005525
Stsc181719g00003 1419 PRINTS GTP-binding elongation factor signature 911 922 IPR000795 GO:0003924|GO:0005525
Stsc181719g00003 1419 PRINTS GTP-binding elongation factor signature 947 956 IPR000795 GO:0003924|GO:0005525
Stsc181719g00003 1419 PRINTS GTP-binding elongation factor signature 831 844 IPR000795 GO:0003924|GO:0005525
Stsc181719g00003 1419 MobiDBLite consensus disorder prediction 1 762 - -
Stsc181719g00003 1419 CDD IF2_aeIF5B_IV 1290 1385 - -
Stsc181719g00003 1419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 826 1118 IPR027417 -
Stsc181719g00003 1419 MobiDBLite consensus disorder prediction 787 823 - -
Stsc181719g00003 1419 CDD IF2_eIF5B 830 1040 - -
Stsc181719g00003 1419 Gene3D Translation factors 1050 1170 - -
Stsc181719g00003 1419 Pfam Elongation factor Tu GTP binding domain 831 1039 IPR000795 GO:0003924|GO:0005525
Stsc181719g00003 1419 MobiDBLite consensus disorder prediction 336 356 - -
Stsc181719g00003 1419 FunFam Eukaryotic translation initiation factor 5B 1169 1275 - -
Stsc181719g00003 1419 FunFam eukaryotic translation initiation factor 5B 1050 1169 - -
Stsc181719g00003 1419 FunFam Eukaryotic translation initiation factor 5B 821 1049 - -
Stsc181719g00003 1419 Gene3D Translation factors 1282 1419 - -
Stsc181719g00003 1419 MobiDBLite consensus disorder prediction 713 732 - -
Stsc181719g00003 1419 Pfam Translation-initiation factor 2 1155 1268 IPR023115 -
Stsc181719g00003 1419 MobiDBLite consensus disorder prediction 135 169 - -
Stsc181719g00003 1419 CDD aeIF5B_II 1051 1161 - -
Stsc181719g00003 1419 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 516 1415 IPR015760 -
Stsc181719g00003 1419 MobiDBLite consensus disorder prediction 288 304 - -
Stsc181719g00003 1419 MobiDBLite consensus disorder prediction 677 712 - -
Stsc181719g00003 1419 Pfam Elongation factor Tu domain 2 1066 1141 IPR004161 GO:0005525
Stsc181719g00003 1419 NCBIfam small GTP-binding protein domain 832 958 IPR005225 GO:0005525
Stsc181719g00003 1419 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 827 1043 IPR000795 GO:0003924|GO:0005525
Stsc181719g00003 1419 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1152 1281 IPR036925 -
Stsc181719g00003 1419 MobiDBLite consensus disorder prediction 81 101 - -
Stsc181719g00003 1419 Gene3D - 823 1049 IPR027417 -
Stsc181719g00003 1419 MobiDBLite consensus disorder prediction 378 392 - -
Stsc181719g00003 1419 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181719g00003 Stsc-Chr181719 15310 23045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181719g00003 253 1419 Eukaryotic Initiation Factors Gene Family AT1G76810 66.946 0.0 1226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181719g00003 K03243 - gmx:100814875 1524.22