Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181715g00001 ATGAACCCTTCTCAGTTCTCATTGGTCACAAAGAAGGAAATTAAACAAAACTTTAACGTCAACTCTGATTTTCACGGAATGATGAATAATTCTCACGCTTATTTGGGGACCAGTGTGAATGTCCATGATCGCGTTGATGCGGCTGCGTCATCGTCATTCCCCCGGAATTCGAGCTTTAAAAACATCTTTTTGGCGGAGAACTGGGCGGAGCTGCCGCTGAAGGAGGACGACGCGGATGACATGGTCATCTACGGCGCATTGCAGGAGGCTGCCACCACCGGATGGTGTCCTGCTAGAGACAATGGCAATGGTAGTAGTGCGGGGACGAAACCAGAAAATGAGGGCAAAAACAATGGCATTGTGGAGGCGCGTGAGGTTCACGTGCTGGCAAAGGGCGGTAGAGGTTTTAGAGGGGTTCGCAGGCGACCGTGGGGGAAGTATGCGGCTGAGATAAGAGATCCAAAGAGGAACGGCGTGAGAGTGTGGCTTGGGACTTATGAGACGGCTGAGGATGCGGCTTTGGCTTATGACCGAGCTGCATTCAAGATGCGTGGCTCGAAAGCCAAGCTGAATTTTCCACACTTGATTGGGTCGGATGAAGTTGGTGAGCCGGTGAGGGTTACTCTGAAGCGGCGCTCACCAGAGACACCATTCTCATGCCCTTCCTACTCTTTGGATTGTGGTAACAATGTGGATAAGCGGAGCAAAAATTCGGTGGCGGCGGCTATGGAGCCGGCTAACACAAGTACGTGGCAATTTTCCATGGGTGAATCTTGGTGGCAACAATAA 789 0.5133 MNPSQFSLVTKKEIKQNFNVNSDFHGMMNNSHAYLGTSVNVHDRVDAAASSSFPRNSSFKNIFLAENWAELPLKEDDADDMVIYGALQEAATTGWCPARDNGNGSSAGTKPENEGKNNGIVEAREVHVLAKGGRGFRGVRRRPWGKYAAEIRDPKRNGVRVWLGTYETAEDAALAYDRAAFKMRGSKAKLNFPHLIGSDEVGEPVRVTLKRRSPETPFSCPSYSLDCGNNVDKRSKNSVAAAMEPANTSTWQFSMGESWWQQ 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181715g00001 262 FunFam Ethylene-responsive transcription factor 2 134 194 - -
Stsc181715g00001 262 Pfam AP2 domain 135 185 IPR001471 GO:0003700|GO:0006355
Stsc181715g00001 262 ProSiteProfiles AP2/ERF domain profile. 135 193 IPR001471 GO:0003700|GO:0006355
Stsc181715g00001 262 MobiDBLite consensus disorder prediction 95 116 - -
Stsc181715g00001 262 PANTHER DNA-BINDING DOMAIN 101 232 IPR044808 GO:0003700|GO:0009873
Stsc181715g00001 262 SUPERFAMILY DNA-binding domain 135 194 IPR016177 GO:0003677
Stsc181715g00001 262 PRINTS Ethylene responsive element binding protein signature 175 195 IPR001471 GO:0003700|GO:0006355
Stsc181715g00001 262 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Stsc181715g00001 262 SMART rav1_2 135 199 IPR001471 GO:0003700|GO:0006355
Stsc181715g00001 262 Gene3D AP2/ERF domain 135 194 IPR036955 GO:0003700|GO:0006355
Stsc181715g00001 262 MobiDBLite consensus disorder prediction 98 113 - -
Stsc181715g00001 262 CDD AP2 143 195 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181715g00001 Stsc-Chr181715 17319 18283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181715g00001 55 215 AP2-EREBP Transcription Factor Family AT2G44840 57.764 9.13e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc181715g00001 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181715g00001 K09286 - gmx:100804762 223.787