Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181713g00005 ATGGGTGAAAAATTTTTCAGAGTATATATTCTCGGAAGAACGAAATCGAAGGTCAATTCACTTCTCCAAAACCCTAACGCTTCGTCTTCCTTCGTTGAAACAACCCAAGCTCTTCACCCGTGCAAATGGCAAGTCTCTCTCTCCCTCTCTCCCTCAGATTCTTCCGAGCCATTCAATGGCTATAATCTAACGCTTCATTCCTCTTTTTCTGTGTCTCTTTATTTTGCAGGTGGATTCTCCTGTGAGAAGGTTACTCCGAGCTTATATGATGATGAGGAATTGACTGACTATAGCGATTATCTTTCCCTCACTATAGACTATACTCACGATGAAGCTATTTGTGTCCATGGAATTCAAGGTCCCCTTCCCCGTGGAGAGCTCAATCAAGATCACGATCCAGGTCAAGGTCCAGGTCTAGGCCTAGGTCTAGGTCTAGATCACGTTCTATCCCAAGACAAAGGCCGAGATCTCGTTCAAGAAGCCGTGGCAGGTTTGATTTCAACATTTGGAGCTGGTGTCTATGAAGTTCATGGCACTCCTTTCTATTATATTCTTCATACAGCACCTGATAATTCTTCCCTTTGTTTTTCTCCGGGTGGAGAGACTCAAAATCCAGGCAATACGCTGTATGTGACAGGTCTATCGTCAAGGGTCACTGAGAGAGACTTAGAGGAGCATTTCTCTAAGGAAGGAAAAGTTGCCTCATGTTTTCTTGTGGTGGAGCCTCGAACACGGATCTCTCGTGGTTTTGCTTTTATCACAATGGATTCTGTTGAGGATGCTAACCGATGTATCAAATATCTAAATCAATCAGTTTTAGAGGGTCGCTATATCACAGTTGAGAGGTCACGAAGAAAGAGGCCAAGGACTCCCACACCTGGACACTATCTTGGGCTGAAAAGTACTAGAGACTACGGTCCCCGTGGCGACCGAGGTGGTGACCGTGGTGGTGATCGTGGAAGGTATCGAGGTGGATCTGGGCGTGATGATTATCAGTACCGACGGTCTCCAAGGCGCTCACCATATCGAGGTGGCAGGGACTATTCACCAAGACGCTCTCCTTACGGTGGAGGTGGAAGATCTAGGAAGGAAAGGTCTAGGTCACCCCCTTATTCTCCATACGGTAGTCCAGATAGGAGATATGCTCGGGGATCTAGGTGA 1161 0.466 MGEKFFRVYILGRTKSKVNSLLQNPNASSSFVETTQALHPCKWQVSLSLSPSDSSEPFNGYNLTLHSSFSVSLYFAGGFSCEKVTPSLYDDEELTDYSDYLSLTIDYTHDEAICVHGIQGPLPRGELNQDHDPGQGPGLGLGLGLDHVLSQDKGRDLVQEAVAGLISTFGAGVYEVHGTPFYYILHTAPDNSSLCFSPGGETQNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDSVEDANRCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDYGPRGDRGGDRGGDRGRYRGGSGRDDYQYRRSPRRSPYRGGRDYSPRRSPYGGGGRSRKERSRSPPYSPYGSPDRRYARGSR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181713g00005 386 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 204 373 - -
Stsc181713g00005 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Stsc181713g00005 386 MobiDBLite consensus disorder prediction 282 386 - -
Stsc181713g00005 386 SUPERFAMILY RNA-binding domain, RBD 192 296 IPR035979 GO:0003676
Stsc181713g00005 386 Gene3D - 188 292 IPR012677 -
Stsc181713g00005 386 SMART rrm1_1 208 281 IPR000504 GO:0003723
Stsc181713g00005 386 CDD RRM_SF 209 281 - -
Stsc181713g00005 386 MobiDBLite consensus disorder prediction 304 346 - -
Stsc181713g00005 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 278 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181713g00005 Stsc-Chr181713 27657 30153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181713g00005 206 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 2.62e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181713g00005 K12897 - twl:120015257 238.039