Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181713g00004 ATGGCGGAAACCGGTAACGGCAATGGCATCATGTACCTCCACGGTGACCTCGAACTCACCATCATTGAGGCTCGCCATTTACCTAACATGGACATCGTCTCGGAGCGATTACGCCGCTGCGTCACCGCCTGCGACACCGTCAACTTCCACTCCTCCCAACCCGCCTCTGCCGACGGCACCAACAACCCTCCCTCCTCCGCCCGCATACACCGCGGTAAAATCATCACCAGCGACCCCTACGTCACTGTCACTGTCCCGCAAGCCACCGTAGCCCGTACGCGCGTGATTCGCAACGCTCAGAACCCGCGTTGGGACGAACGCTTTCACATCCCGCTCGCTCATCCTCTCGTCGACCTCGAGTTCCGCATCAAGGACGACGACGTCTTCGGTGCCGAAACTATCGGCACCGCCAAGATTCCGGCAACCAGAATCGCCACCGGCGACGTCATTTCCGGCTGGTTCGATATACTCAATTCCTCCGGCAAGCCACCAAAGGCGAACGCCGCGCTCCGCCTCGAGATGAAATTCACGGCGGTGCAGGACAACCCGCTTTATCGGAGCGGCATCGCCGCAGATCCAGAGCACCGTGGTGTGCGGCACACGTACTTTCCAGTGAGGAGAGGGAGCTCGGTGAGGCTGTATCAGGACGCGCATTGCCCCGACGGTTTGTTGCCGGAGATTGAAATAGATGGAGGGAGGGTTTATCGGCACGAGAAATGCTGGGAAGATATATGCTACGCTATCTCGGAGGCTCACCACATGGTTTATGTTGTTGGCTGGTCCGTTTTCCATAAGATTAAGCTTGTTAGGGAACCCACGAAGCCGTTACCGCGTGGCGGAGACTTGACCCTCGGCGAGTTGCTCAAGTACAAGTCTCAAGAAGGGGTTAGGGTTCTCTTGATGGTTTGGGATGACAAGACTTCACATGATAAGTTCTTCTTTAAGTCGGCTGGAGTAATGCAAACTCATGATGAGGAAACGAAGAAGTTTTTTAAACATTCCTCTGTTATATGTGTTCTGGCACCTCGCTATGGTAGCAGCAAGCTGAGCTTCTTGAAGCAGCAGGTTGTTGGAACTGTCTTCACACACCACCAAAAATGTGTTATTGTGGACACACAAGCTCCTGGCAATGACAGAAAGATAACCGTTTTTATGGGAGGTCTTGATATGTGTGATGGTCGCTATGACACACCTCAGCATCGACTTTTCAAGGATCTTGACACCGTATTTGATGGTGATTTCCACAATCCTACATTTCCTTCTGGAACAAAGGCTCCAAGGCAACCGTGGCATGATTTACACTGCAGAATAGATGGGCCTGCTGCATATGACATTCTTATTAATTTTGAGCAGCGATGGAGAAAATCCACTAAGTGGAAAGAGTTTGCTTTAATGTTCAAAAAAGCTTCTCAGTGGAATGATGATGCATTGATACGAATAGAACGGATCTCCTGGATAACAAGTCCTGCCATTCCTCCTTCAAAGGAAAAGCATACAATTGTTCCAGATGACGACCCAAGAGTATGGGTTTCTCATGAAGCTGATCCTGAAACCTGGCATGTTCAGATCTTCCGCTCTATTGACTCCGGATCCCTGAAAGGATTTCCCAAGCGTGTTGATGTTGCTTTGTCGCAGAATCTTATCTGTGCTAAAAATTTGGTCATAGACAAAAGCATTCAAACAGGATACATTCAAGCAATCAGATCTGCTCAACATTTCATTTATATTGAAAACCAATACTTCATTGGTTCATCATATGCATGGCTAGATTATAAAGATGCAGGGGCTGACAATCTTATCCCAATGGAACTGGCACTGAAAATTGCTAGTAAAATCAGAGCAAAAGAGAGATTTGCTGTTTATATTATTTTACCAATGTGGCCAGAGGGTGATCCAAAAACTGGAGCTATGCAAGAAATCCTCTTTTGGCAGAGCCAGACAATGCAGATGATGTATCAAGTTGTTGCTAGAGAATTGAAATCAATGCAGCTTGATGACGTACGCTTGCAAGACTACCTCAACTTTTATTGCCTTGGAAATCGGGAAGCATTCAACGAAGAACCCTCAAATGGAAATAATGGACTTGTTTCAGGAGCATATGAGCATCGCCGATTTATGATTTATGTGCATGCTAAGGGGATGATTGTCGATGATGAGTATGTCATAGTGGGGTCTGCTAATATAAACCAAAGATCTATGGCTGGCACTAAGGATACTGAGATAGCCATGGGTGCATATCAACCCCATTACACCTGGTCTGGGAAGAAAAGACATCCATATGGTCAGATTTATGGTTATAGAATGTCACTGTGGGCAGAGCATCTTGGCATGTCAGAAGAAATTTTCAGGGAACCAGAGAGTTTGGAGTGTGTGCGTAAAGTGAATGAAATTGCCGAAGAAAACTGGAGAAGATATATTTCTGATGAATTTTTTGAGCTGCAAGGACATCTCCTGAGGTATCCCTTACAGGTGGATCAGGATGGGACGGTAAGCGCTCTCTCTGGTTGTGAGACTTTCCCAGATGCCGGTGGTAAGATACTTGGGACTCACTCTCCAACAATTCCAGATATCCTAACAACATAA 2583 0.4735 MAETGNGNGIMYLHGDLELTIIEARHLPNMDIVSERLRRCVTACDTVNFHSSQPASADGTNNPPSSARIHRGKIITSDPYVTVTVPQATVARTRVIRNAQNPRWDERFHIPLAHPLVDLEFRIKDDDVFGAETIGTAKIPATRIATGDVISGWFDILNSSGKPPKANAALRLEMKFTAVQDNPLYRSGIAADPEHRGVRHTYFPVRRGSSVRLYQDAHCPDGLLPEIEIDGGRVYRHEKCWEDICYAISEAHHMVYVVGWSVFHKIKLVREPTKPLPRGGDLTLGELLKYKSQEGVRVLLMVWDDKTSHDKFFFKSAGVMQTHDEETKKFFKHSSVICVLAPRYGSSKLSFLKQQVVGTVFTHHQKCVIVDTQAPGNDRKITVFMGGLDMCDGRYDTPQHRLFKDLDTVFDGDFHNPTFPSGTKAPRQPWHDLHCRIDGPAAYDILINFEQRWRKSTKWKEFALMFKKASQWNDDALIRIERISWITSPAIPPSKEKHTIVPDDDPRVWVSHEADPETWHVQIFRSIDSGSLKGFPKRVDVALSQNLICAKNLVIDKSIQTGYIQAIRSAQHFIYIENQYFIGSSYAWLDYKDAGADNLIPMELALKIASKIRAKERFAVYIILPMWPEGDPKTGAMQEILFWQSQTMQMMYQVVARELKSMQLDDVRLQDYLNFYCLGNREAFNEEPSNGNNGLVSGAYEHRRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGTKDTEIAMGAYQPHYTWSGKKRHPYGQIYGYRMSLWAEHLGMSEEIFREPESLECVRKVNEIAEENWRRYISDEFFELQGHLLRYPLQVDQDGTVSALSGCETFPDAGGKILGTHSPTIPDILTT 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181713g00004 860 SMART pld_4 359 394 IPR001736 GO:0003824
Stsc181713g00004 860 SMART pld_4 705 732 IPR001736 GO:0003824
Stsc181713g00004 860 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 705 732 IPR001736 GO:0003824
Stsc181713g00004 860 FunFam Phospholipase D delta 231 475 - -
Stsc181713g00004 860 Gene3D Endonuclease Chain A 532 752 - -
Stsc181713g00004 860 Pfam PLD-like domain 564 742 IPR025202 -
Stsc181713g00004 860 SMART C2_3c 16 153 IPR000008 -
Stsc181713g00004 860 Gene3D Endonuclease Chain A 229 479 - -
Stsc181713g00004 860 PANTHER PHOSPHOLIPASE D 10 848 IPR015679 -
Stsc181713g00004 860 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 359 394 IPR001736 GO:0003824
Stsc181713g00004 860 PIRSF PLD_plant 3 860 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc181713g00004 860 Pfam Phospholipase D Active site motif 359 394 IPR001736 GO:0003824
Stsc181713g00004 860 Pfam C2 domain 15 156 IPR000008 -
Stsc181713g00004 860 Pfam Phospholipase D C terminal 779 849 IPR024632 -
Stsc181713g00004 860 ProSiteProfiles C2 domain profile. 1 154 IPR000008 -
Stsc181713g00004 860 SUPERFAMILY Phospholipase D/nuclease 200 464 - -
Stsc181713g00004 860 CDD C2_plant_PLD 11 177 - -
Stsc181713g00004 860 Gene3D C2 domain 13 184 IPR035892 -
Stsc181713g00004 860 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 176 IPR035892 -
Stsc181713g00004 860 SUPERFAMILY Phospholipase D/nuclease 556 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181713g00004 Stsc-Chr181713 20147 27074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181713g00004 1 696 Phospholipase D Gene Family (Wang group) AT4G35790 69.088 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181713g00004 K01115 - gmx:100814486 1446.03