Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181711g00003 ATGGCAGAAAAAATGTTCCTCGGAAGCAGTGAGGACGAGAGAAAGTTGAAACGCAAGATGGAAGATTCACCCACCGTGAAAGGTCTAGAGTCAGAGTCAGACGATTTAACACTGACTTTGACTTTAGCAATCAAAACCAAGGTGGATGAATCCGATTCTAAAGCCAAATCGACTTCTAAACCCTCAAAAGATCCTGAAGGTTCCTCCAATGACAAGGAATCAGGATGCCATCTTGATAATAATAATAACATTGTTGGCGAAAACAACGACGACAACAATGAAGATCCTCCATTCAATTGTGGATATTGCAAGAGAAGATTTAGCACTTCCCAAGCCCTTGGGGGACACCAAAACGCACACAGGAGTGAGCGTTCTCCCTTAAACAAAAGAAAGAAAACAAACCAACCCGAAGATACAGACCAAACAAACCTATTTCCTAACCATGGTCTTGGTAGTTTTCTTAGTTCAAAATATTCTTCTCCATACTCCAACACCGTGCCAAGCCTGAGATTCCAAGGGCTATTGTCATCCTCGTCCTCGTCATTATCGTCCTCAACCCTAACTCCACACCAATACCGTCGTGGGGGTGCCACAACGATGACAGGGAGTCACGTGCATAGTCGCGTGCCATCCTTATCACCCTGGCGCCCCAGTTCGATTGGTGGTCGAACTTTTGGAGGCTATGGCGGCTCTTCTTATGGGATGCGATCTTTCCCCAAAGCATCGTCATCCCTGTGGCCGCCGCAAAATCGGTTTGGGATGAATAGCTCTTGGAAAGAGGAACATGGTGGTATTTTGGAGAGAATAAACCACAATAGGCACATGGGGCTTCTCAATGAACTGAGTCGCATCCCTTCATCTCCCGAGGCTGCCAACCGGAGCGGCCGTCATCAACCTCATGCTCCTCCGCATACAGAGTCCGGTGAAGGCCGAGGTGGCAGCGGTGGTGTTGGCCTTGGTGGTGACAGTAACAATGGTGGTGAAAATAACAATAATAATAACAATAATAATAATAATAATAATAATAATAATGAGAATGAGAATTCCAGTGTGGCACCAAATGCTTCAGCATCCGAAGAGCTAGAAGAGTTAGACTTAACCCTGGGTCTTTGA 1113 0.4591 MAEKMFLGSSEDERKLKRKMEDSPTVKGLESESDDLTLTLTLAIKTKVDESDSKAKSTSKPSKDPEGSSNDKESGCHLDNNNNIVGENNDDNNEDPPFNCGYCKRRFSTSQALGGHQNAHRSERSPLNKRKKTNQPEDTDQTNLFPNHGLGSFLSSKYSSPYSNTVPSLRFQGLLSSSSSSLSSSTLTPHQYRRGGATTMTGSHVHSRVPSLSPWRPSSIGGRTFGGYGGSSYGMRSFPKASSSLWPPQNRFGMNSSWKEEHGGILERINHNRHMGLLNELSRIPSSPEAANRSGRHQPHAPPHTESGEGRGGSGGVGLGGDSNNGGENNNNNNNNNNNNNNNNENENSSVAPNASASEELEELDLTLGL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181711g00003 370 MobiDBLite consensus disorder prediction 111 148 - -
Stsc181711g00003 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Stsc181711g00003 370 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Stsc181711g00003 370 MobiDBLite consensus disorder prediction 1 29 - -
Stsc181711g00003 370 MobiDBLite consensus disorder prediction 1 93 - -
Stsc181711g00003 370 MobiDBLite consensus disorder prediction 285 370 - -
Stsc181711g00003 370 MobiDBLite consensus disorder prediction 30 46 - -
Stsc181711g00003 370 MobiDBLite consensus disorder prediction 323 356 - -
Stsc181711g00003 370 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 46 178 IPR044246 GO:0009788
Stsc181711g00003 370 MobiDBLite consensus disorder prediction 74 93 - -
Stsc181711g00003 370 MobiDBLite consensus disorder prediction 47 73 - -
Stsc181711g00003 370 MobiDBLite consensus disorder prediction 122 137 - -
Stsc181711g00003 370 SUPERFAMILY beta-beta-alpha zinc fingers 95 125 IPR036236 -
Stsc181711g00003 370 MobiDBLite consensus disorder prediction 199 218 - -
Stsc181711g00003 370 Pfam C2H2-type zinc finger 98 123 - -
Stsc181711g00003 370 Gene3D Classic Zinc Finger 76 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181711g00003 Stsc-Chr181711 25466 26578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181711g00003 98 137 C2H2 Transcription Factor Family AT5G01860 61.905 4.38e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181711g00003 zf-C2H2_6 3.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181711g00003 - - ahf:112757344 297.745