Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181711g00002 ATGTCAAGCACCTCCTCTTCCTCTTCCTCCCCGGTTAACCAGCCATGGCCAAGCAGCAAGGGCAAAGAGAAAGTCACTTATGATGATGTGATGAACAAGGGCAATAAGGGGATCCATATCAAGGAACCAGAAGATCATCTTTATTATGATAATTCAAGTAGTAGTAGTGATGATGATCTTCATGGTTTAATGGATCCCAACAACACCGATGATGGTTCTGCTGCTGATGAAGAAAGTAGTGATGATTCCACTGAAGAAGGGGAATCCAGCCCTGACAACACTGTGACTGTTGATGGTAGCCGAAATTCGCCAAGGGACAAATCTGTATACAATTGCAGCTATTGTGCGAAGAGCTTCTCTTCCCCACAAGCTCTTGGGGGTCACCAAAATGGTCACAAAATGGAGAGATTGTACCAATCCCATACCCATAACAGCATCGGAAATGGGGTCGAATACTTAAATAACATTTCCATGGGTTCGGGTATGAGTGTGGGTATGACCCCATCACCATCAAGCTTCATGCAGCTACCTCCTTCACCAACCATCCCTCCTTTCCGTCCCGTCTTCCGTGGGGGAGCTAATAGCCTTCATCACCACCAACCCATGAATGTGATGATGGGAAACAACAATCTTGACATTAACAATAGCTATAATCCTTATCATCACGATGGTTTGTTCCAGAACAATGCAGCGAGACCATCAAACCTTTTCAGGCCTGTTCCTGTGCCTGCTGGTATTGCATATTCTCATGCTGGTTCTGGTGCAGTTGGGGTTGGAAACATGATGGGTGCATTTCAGCCCAACATTGCATACCCTGGTGCTGGTTCTGGTTCTGGTGCAGTTGGGATTGGAAGCATCTCTGGTGCATTTCATGATCAGCGTCCGTATGAATTTCAAAACAGAGGCCTCTATGGTGGTGCATCCGAGCATCCTCTTCCTCGTCGTCCTCCTATGGCGGCTGCTGGGATCGGAAGAATTAGAGACGAAGAGGACGAAGACAACAGTGGTGGTGTGAACAAGAGGCGTAGGCTGAATGAGCCTTGTGAGACCCAACAGGGTGGAATTGAGTTTGTTTTGCTTCCATCTGCAGCAAGAAACAACAATGATACTAAGGTGGAGATTGACTTTGGTTTGGTTCCAAAGAGAGACTGA 1152 0.4679 MSSTSSSSSSPVNQPWPSSKGKEKVTYDDVMNKGNKGIHIKEPEDHLYYDNSSSSSDDDLHGLMDPNNTDDGSAADEESSDDSTEEGESSPDNTVTVDGSRNSPRDKSVYNCSYCAKSFSSPQALGGHQNGHKMERLYQSHTHNSIGNGVEYLNNISMGSGMSVGMTPSPSSFMQLPPSPTIPPFRPVFRGGANSLHHHQPMNVMMGNNNLDINNSYNPYHHDGLFQNNAARPSNLFRPVPVPAGIAYSHAGSGAVGVGNMMGAFQPNIAYPGAGSGSGAVGIGSISGAFHDQRPYEFQNRGLYGGASEHPLPRRPPMAAAGIGRIRDEEDEDNSGGVNKRRRLNEPCETQQGGIEFVLLPSAARNNNDTKVEIDFGLVPKRD 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181711g00002 383 MobiDBLite consensus disorder prediction 1 106 - -
Stsc181711g00002 383 MobiDBLite consensus disorder prediction 1 20 - -
Stsc181711g00002 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Stsc181711g00002 383 MobiDBLite consensus disorder prediction 71 88 - -
Stsc181711g00002 383 Pfam C2H2-type zinc finger 109 129 - -
Stsc181711g00002 383 MobiDBLite consensus disorder prediction 324 347 - -
Stsc181711g00002 383 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Stsc181711g00002 383 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 146 IPR044246 GO:0009788
Stsc181711g00002 383 MobiDBLite consensus disorder prediction 323 350 - -
Stsc181711g00002 383 MobiDBLite consensus disorder prediction 89 106 - -
Stsc181711g00002 383 MobiDBLite consensus disorder prediction 22 52 - -
Stsc181711g00002 383 Gene3D Classic Zinc Finger 87 152 - -
Stsc181711g00002 383 SUPERFAMILY beta-beta-alpha zinc fingers 107 139 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181711g00002 Stsc-Chr181711 11239 12645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181711g00002 92 136 C2H2 Transcription Factor Family AT5G25160 42.222 3.70e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181711g00002 zf-C2H2_6 7.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181711g00002 - - adu:107494137 286.189