Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181710g00006 ATGAACAACACAACTAGTGATTCTTCTTCAGGATTCCTTGGATCCAATAACATAAGTGGATTTGGCTATGGCATTGGAATCTCAATTGGGATTCTTCTTCTCATCACAACAATCACACTCACCTCATACTTTTGCACAAGAACACAAGTTCCCAACAACAACAATAGGAGGAGGAGTAATCCTACTCCGGGTTCAAGGATGACCACCCAAATATTCCTCGAACCGCAACACACGGTACTCGATGTGGGACTTGATGAAGCAACAATTCTTGGGTATCCAAAGATGCTTTACTCAGAAGCAAAGAAACTCCACAAGAATAAATCTTATGACGATTCAACTTCATGCTGCTCAATTTGTCTTGGAGATTATAAGGGGAGTGATGTGCTTAGAATTTTGCCAGATTGTGAGCATGTTTTTCATCTCAAGTGCATAGATCCATGGCTGAGATTGCATCCAACTTGTCCTCTCTGTAGAACATCACCAATTCCAACACCACTTTCTACTCCTCTTGCTGAAGTTGTTCCATTAGCAACAAGAAGAGATTGA 546 0.4103 MNNTTSDSSSGFLGSNNISGFGYGIGISIGILLLITTITLTSYFCTRTQVPNNNNRRRSNPTPGSRMTTQIFLEPQHTVLDVGLDEATILGYPKMLYSEAKKLHKNKSYDDSTSCCSICLGDYKGSDVLRILPDCEHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181710g00006 181 CDD RING-H2_EL5-like 115 158 - -
Stsc181710g00006 181 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Stsc181710g00006 181 SMART ring_2 116 157 IPR001841 -
Stsc181710g00006 181 Pfam Ring finger domain 116 158 IPR001841 -
Stsc181710g00006 181 SUPERFAMILY RING/U-box 115 163 - -
Stsc181710g00006 181 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 172 IPR045899 -
Stsc181710g00006 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 162 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181710g00006 Stsc-Chr181710 35712 36547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181710g00006 1 179 C3H Transcription Factor Family AT5G06490 48.958 1.23e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181710g00006 - - gmx:100796149 226.868