Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181710g00004 | ATGGCTATGGAAACTGCATATCTGAAAGAACATGAAGGAATTGTTCACAATTCAGTTGGACAGCTGTCATCAGCAGCTTCTTCATGGTGGAGTATTAGTGCCTTTGGATCTCAAAATCAATCATCTTCAGTTTATGGAGACACTTCTAATAACCAAATAATTATGAAACCATTTTCATTGGAGCTTCCTAGTAATAATAATAATTACATTGACCACCTTGCTCCTTCCACTAATATTAAGCAACAGCAATTCTTGGATAATAAAGGACCTACAACACAATTTACCATCTTTCCAGAAGATTGCAAAATTTCAGGTGAATCACAGAAGTCTCATCAAGCAACATTATCTTTGCAGACATCAATTGCTGACCCTAGGAACCGTTTTGACCTTGGATTCACTCAGCCTATGGTACAAAAATTCTCAAAAATTTGTGCAAAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCCTATGCACCTCAAATTTCGGGGCGTATAATGCTGCCACTGAACTTGACTTCAGATGAGGGACCAACTTACGTGAATGCCAAGCAATACCATGGAATCTTAAGGCGTAGGCAGTCGCGTGCGAAAGCTGTTCTTGCCAATAAACTTGTAAAACGTCGCAAGCCATATATGCATGAATCGCGCCATCTCCACGCGATGCGGCGGCCAAGAGGATGCGGTGGGAGGTTCTTGAACACAAGAAACTCCACCACCAATGGAAATGGCAAGAGTGGAAGTGAAGCAAACAAAAAAGGACTTGTCCAACAACTGCAGTCTAGTGGCTCTCAGAGTTCTGAAGTCCTGCAATCCTCGGCCGGAACCTTGAATTCGTCGAAGGAAACGAATGGAAGCAGTCCAAACATTTCATCAGAGGTGACAAGCATGTATTCATCAAGAGGAGGAATTGATGGATTTGCCATCAATCATATTGGAACTTCTATGCACTCTCTTGCAGATATGATGGGAAATGGACATGGACATGGCATGATCATGCCCCCGAAATGGGTTTCGGCTGCGGCCGGAAACTGCTGCAACCTTAATGTATAA | 1059 | 0.424 | MAMETAYLKEHEGIVHNSVGQLSSAASSWWSISAFGSQNQSSSVYGDTSNNQIIMKPFSLELPSNNNNYIDHLAPSTNIKQQQFLDNKGPTTQFTIFPEDCKISGESQKSHQATLSLQTSIADPRNRFDLGFTQPMVQKFSKICAKYPYMDQFYGLFSAYAPQISGRIMLPLNLTSDEGPTYVNAKQYHGILRRRQSRAKAVLANKLVKRRKPYMHESRHLHAMRRPRGCGGRFLNTRNSTTNGNGKSGSEANKKGLVQQLQSSGSQSSEVLQSSAGTLNSSKETNGSSPNISSEVTSMYSSRGGIDGFAINHIGTSMHSLADMMGNGHGHGMIMPPKWVSAAAGNCCNLNV | 352 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181710g00004 | 352 | MobiDBLite | consensus disorder prediction | 234 | 298 | - | - | |
Stsc181710g00004 | 352 | ProSiteProfiles | NF-YA/HAP2 family profile. | 177 | 237 | IPR001289 | GO:0003700|GO:0006355 | |
Stsc181710g00004 | 352 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 67 | 299 | IPR001289 | GO:0003700|GO:0006355 | |
Stsc181710g00004 | 352 | Gene3D | - | 177 | 239 | - | - | |
Stsc181710g00004 | 352 | MobiDBLite | consensus disorder prediction | 215 | 298 | - | - | |
Stsc181710g00004 | 352 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 180 | 234 | IPR001289 | GO:0003700|GO:0006355 | |
Stsc181710g00004 | 352 | PRINTS | CCAAT-binding transcription factor subunit B signature | 180 | 202 | IPR001289 | GO:0003700|GO:0006355 | |
Stsc181710g00004 | 352 | PRINTS | CCAAT-binding transcription factor subunit B signature | 211 | 234 | IPR001289 | GO:0003700|GO:0006355 | |
Stsc181710g00004 | 352 | SMART | cbf3 | 176 | 237 | IPR001289 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181710g00004 | Stsc-Chr181710 | 19270 | 23290 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181710g00004 | 20 | 350 | CCAAT-HAP2 Transcription Factor Family | AT3G05690 | 37.791 | 9.97e-52 | 173 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YA | Stsc181710g00004 | CBFB_NFYA | 2.6e-25 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181710g00004 | K08064 | - | gmx:100808195 | 404.445 |