Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181710g00004 ATGGCTATGGAAACTGCATATCTGAAAGAACATGAAGGAATTGTTCACAATTCAGTTGGACAGCTGTCATCAGCAGCTTCTTCATGGTGGAGTATTAGTGCCTTTGGATCTCAAAATCAATCATCTTCAGTTTATGGAGACACTTCTAATAACCAAATAATTATGAAACCATTTTCATTGGAGCTTCCTAGTAATAATAATAATTACATTGACCACCTTGCTCCTTCCACTAATATTAAGCAACAGCAATTCTTGGATAATAAAGGACCTACAACACAATTTACCATCTTTCCAGAAGATTGCAAAATTTCAGGTGAATCACAGAAGTCTCATCAAGCAACATTATCTTTGCAGACATCAATTGCTGACCCTAGGAACCGTTTTGACCTTGGATTCACTCAGCCTATGGTACAAAAATTCTCAAAAATTTGTGCAAAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCCTATGCACCTCAAATTTCGGGGCGTATAATGCTGCCACTGAACTTGACTTCAGATGAGGGACCAACTTACGTGAATGCCAAGCAATACCATGGAATCTTAAGGCGTAGGCAGTCGCGTGCGAAAGCTGTTCTTGCCAATAAACTTGTAAAACGTCGCAAGCCATATATGCATGAATCGCGCCATCTCCACGCGATGCGGCGGCCAAGAGGATGCGGTGGGAGGTTCTTGAACACAAGAAACTCCACCACCAATGGAAATGGCAAGAGTGGAAGTGAAGCAAACAAAAAAGGACTTGTCCAACAACTGCAGTCTAGTGGCTCTCAGAGTTCTGAAGTCCTGCAATCCTCGGCCGGAACCTTGAATTCGTCGAAGGAAACGAATGGAAGCAGTCCAAACATTTCATCAGAGGTGACAAGCATGTATTCATCAAGAGGAGGAATTGATGGATTTGCCATCAATCATATTGGAACTTCTATGCACTCTCTTGCAGATATGATGGGAAATGGACATGGACATGGCATGATCATGCCCCCGAAATGGGTTTCGGCTGCGGCCGGAAACTGCTGCAACCTTAATGTATAA 1059 0.424 MAMETAYLKEHEGIVHNSVGQLSSAASSWWSISAFGSQNQSSSVYGDTSNNQIIMKPFSLELPSNNNNYIDHLAPSTNIKQQQFLDNKGPTTQFTIFPEDCKISGESQKSHQATLSLQTSIADPRNRFDLGFTQPMVQKFSKICAKYPYMDQFYGLFSAYAPQISGRIMLPLNLTSDEGPTYVNAKQYHGILRRRQSRAKAVLANKLVKRRKPYMHESRHLHAMRRPRGCGGRFLNTRNSTTNGNGKSGSEANKKGLVQQLQSSGSQSSEVLQSSAGTLNSSKETNGSSPNISSEVTSMYSSRGGIDGFAINHIGTSMHSLADMMGNGHGHGMIMPPKWVSAAAGNCCNLNV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181710g00004 352 MobiDBLite consensus disorder prediction 234 298 - -
Stsc181710g00004 352 ProSiteProfiles NF-YA/HAP2 family profile. 177 237 IPR001289 GO:0003700|GO:0006355
Stsc181710g00004 352 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 67 299 IPR001289 GO:0003700|GO:0006355
Stsc181710g00004 352 Gene3D - 177 239 - -
Stsc181710g00004 352 MobiDBLite consensus disorder prediction 215 298 - -
Stsc181710g00004 352 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 180 234 IPR001289 GO:0003700|GO:0006355
Stsc181710g00004 352 PRINTS CCAAT-binding transcription factor subunit B signature 180 202 IPR001289 GO:0003700|GO:0006355
Stsc181710g00004 352 PRINTS CCAAT-binding transcription factor subunit B signature 211 234 IPR001289 GO:0003700|GO:0006355
Stsc181710g00004 352 SMART cbf3 176 237 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181710g00004 Stsc-Chr181710 19270 23290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181710g00004 20 350 CCAAT-HAP2 Transcription Factor Family AT3G05690 37.791 9.97e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc181710g00004 CBFB_NFYA 2.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181710g00004 K08064 - gmx:100808195 404.445