Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181703g00001 ATGCAAGATCCAACAACAGCATTCCAAGTCCAACAAGCCATGTTGAAAAAACCACACTTCCCAGAACAAGAACAACAACTGAAGTGTCCAAGGTGTGAATCCACAAACACCAAGTTTTGTTACTACAACAACTACAACCTCTCTCAGCCACGCCATTTCTGCAAGAATTGCAGAAGGTATTGGACCAAAGGTGGTGCCTTGAGGAACATACCCGTTGGTGGTGGAACCAGAAAGACCCACAAACGTTCTTCTTCATCTTCTTCATCTTCCACTTCAAATTCATCCACCAAACGCCCTTCATCATCATCATCACAGCAAGCCAATTCTGTTACTAATAGTAGTGTTATTTGTTCCGGGTCCGAACCGACCCGAATTTACACCGACCCGGATGGTCAAGATCAGAGAGTGTTGAACATTGGTGGGGGCTTTAGTTCACTATTGGGATCAAGTGGACATTTTGGAGGGATTTTTCAGGGTCTCAATTCAAATGGGTCAGGGCTGAAAATTGGTGAATTTGGTGGTGGGATTGGGAATGTGGGTTCTGGATTGGTTGCGAATCCGGATTCGGGTCGGAACCCGGGTTTGGATATTCAGAATAACGGTGACTCAAGCTATTGGAATAATGGTGGTGGTGGTCATGGTTGGTCTGATCTTGCAATATACACACCTGGATCAAGCTTTCAGTAG 687 0.4527 MQDPTTAFQVQQAMLKKPHFPEQEQQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKTHKRSSSSSSSSTSNSSTKRPSSSSSQQANSVTNSSVICSGSEPTRIYTDPDGQDQRVLNIGGGFSSLLGSSGHFGGIFQGLNSNGSGLKIGEFGGGIGNVGSGLVANPDSGRNPGLDIQNNGDSSYWNNGGGGHGWSDLAIYTPGSSFQ 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181703g00001 228 ProSitePatterns Zinc finger Dof-type signature. 29 65 IPR003851 GO:0003677|GO:0006355
Stsc181703g00001 228 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 127 IPR045174 GO:0003700|GO:0006355
Stsc181703g00001 228 MobiDBLite consensus disorder prediction 68 132 - -
Stsc181703g00001 228 ProSiteProfiles Zinc finger Dof-type profile. 27 81 IPR003851 GO:0003677|GO:0006355
Stsc181703g00001 228 MobiDBLite consensus disorder prediction 78 127 - -
Stsc181703g00001 228 Pfam Dof domain, zinc finger 25 81 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181703g00001 Stsc-Chr181703 9899 10585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181703g00001 1 157 C2C2-Dof Transcription Factor Family AT1G51700 53.254 6.81e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc181703g00001 zf-Dof 4.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181703g00001 - - aip:107619380 268.47