Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181702g00002 ATGGCGGGTTTGGCACCTGAAGGAACACAATTTGATGCTCGGCAATATGATTCTAAGATGAATGAGTTGCTTTCGTCCGATGGGCAAGAATTCTTCACCTCATATGATGAAGTCTATGATAGTTTTGATGCAATGGGATTACAAGAAAATCTTCTCAGAGGCATATATGCTTATGGTTTCGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTAGATGTGATTCAGCAGGCTCAATCTGGAACCNNNNNNNNNNGTTCCGGAATTTTGCAGCAGCTTGATTATGGAGTGGTTCAGTGTCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTGGCACAGCAAATTGAGAAGGTTATGCGAGCACTCGGTGATTACCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTCCAGGCTGGTGTCCACACCGTTGTTGGGACTCCCGGCCGTGTGTTTGACATGCTGCGGAGACAGTCTCTTCGCCCGGATTACATAAAGATGTTTGTTTTGGATGAGGCCGATGAAATGCTTTCGCGTGGTTTCAAAGACCAGATCTATGACATCTTTCAGCTTCTACCATCTAAAATTCAGGTTGGAGTGTTCTCTGCTACCATGCCACCAGAAGCCCTTGAGATCACAAGGAAGTTCATGAATAAACCAGTGAGAATCCTGGTAAAGCGAGACGAATTGACCCTTGAGGGTATCAAGCAGTTTTATGTGAATGTTGAGAAGGAAGAATGGAAGCTAGAGACACTCTGTGACCTCTATGAGACTCTGGCCATCACACAAAGTGTCATATTTGTGAACACAAGGCGCAAGGTGGATTGGCTCACTGACAAGATGCGAAGCAACGACCACACAGTCTCGGCAACACACGGTGACATGGATCAAAACACCCGTGATATCATTATGCGCGAATTCCGGTCAGGCTCTTCTAGAGTTCTTATCACCACGGACCTATTGGCCCGCGGCATAGATGTGCAGCAAGTGTCTCTGGTTATAAACTATGATCTTCCAACACAACCTGAGAACTACCTTCATCGCATAGGAAGGAGTGGGAGGTTTGGAAGGAAAGGTGTTGCTATAAACTTTGTGACTTTGGATGATGCAAGAATGCTTTCTGATATTCAGAAGTTCTACAATGTCAGTGTAGAGGAGTTGCCATCAAATGTTGCTGATCTGCTTTGA 1233 0.4558 MAGLAPEGTQFDARQYDSKMNELLSSDGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTXXXXSGILQQLDYGVVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVSVEELPSNVADLL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181702g00002 410 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 184 192 IPR000629 -
Stsc181702g00002 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Stsc181702g00002 410 SMART ultradead3 59 253 IPR014001 -
Stsc181702g00002 410 SMART helicmild6 290 371 IPR001650 -
Stsc181702g00002 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Stsc181702g00002 410 FunFam Eukaryotic initiation factor 4A-III 245 410 - -
Stsc181702g00002 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 238 IPR014001 -
Stsc181702g00002 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 38 394 - -
Stsc181702g00002 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Stsc181702g00002 410 Gene3D - 246 410 IPR027417 -
Stsc181702g00002 410 FunFam Eukaryotic initiation factor 4A-II 28 244 - -
Stsc181702g00002 410 Pfam DEAD/DEAH box helicase 65 223 IPR011545 GO:0003676|GO:0005524
Stsc181702g00002 410 CDD SF2_C_DEAD 250 380 - -
Stsc181702g00002 410 Gene3D - 30 245 IPR027417 -
Stsc181702g00002 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 391 IPR027417 -
Stsc181702g00002 410 CDD DEADc_EIF4A 44 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181702g00002 Stsc-Chr181702 13105 15269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181702g00002 1 410 Eukaryotic Initiation Factors Gene Family AT1G72730 87.198 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181702g00002 K03257 - gmx:100777628 775.007