Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181701g00002 ATGGTGCTCCAATTTGATCCCAGGTATCTAACATCCATTGCATTGGTTGGTTTTGTTGGATTATTGGTTGTTTTGTACAATAATCTTGTGGTGAAGCCAAAGAGGATTAGATCAAAGCTAAGTAATCAAGGTATAAATGGTCCAACTCCAACTTTTTTGCTTGGAAATATTAGGGAGATAATGAATGCTTGTCAACTCATCATTACAACTACTTCAAAGTCTCCTTCTTCTGTTGTTGAAGTCCCTCATGTTCATGACACTTGTCCACTTACCTTCCCTTACTTAAACATATGGAAGCAGAAATACGGCCAAATGTTCTTGTTTTCTATTGGAAACAATCAAATATTGTATGTGGACAAACCTGAGGTAGTGAGAGACATAGTTACATGCACATCCATGGACTTAGGCAAGCCTACTTATACTAATAGAGAACTAAGACCTCTCCTTGGTCGGGGCATTTTGTCTTCCAATGGAACAACATGGGCCGGTCAAAGAAAGATCCTTGCTCCTGAATTTTACATGGAAAAAGTTAAGGAAATGATGAGTATAATGGGTGAATATGCTACTTCTCTGCTAAACCAGTGGAACAGTATCATAGAGGCACAAAATGGAAATGCAGATATAAAAGTTGATGATTACTTGGTAAAATTTTCTGGGGATGTTATTTCAAGAGCATGTTTTGGTAGAGATTATTTCAAGGGACAAGAAATTTTCTCCAAACTTATAGCATTGCAGGAGATCCTGTCAAAAAATTCACTGAGTGTAATGATTCCTGGAATGAGATGCCTTCCAACAAAGGATAATAGAGAAGCAAAAGCTCTAGAAAAAGAGTTGAAAAATTATATACTCCAATTGGTTAAGCAGAGAGAGGAATCACCTCATCATCACAACAGAGACTTGTTGCAAATGCTTCTTGAGTCTACCAAAAACAGTGATCTCACTCAACATGCCATTCAAACCTTTATTGCTGATAACTGCAAGAACATATATTTTGCTGGATATGAAACCACTGCAATTTCCATGGCATGGTGCCTCATGTTGCTAGCTTCAAATCAAGAGTGGCAAGATCGCGTTCGCACCGAGGCCCTAGAAATTTGCAACGGTAGAATCCCAGACTATCACATGCTCACTAAGATGAAGCAGCTAACAATGGTTATTCATGAAACACTACGGCTTTATCCACCAGCACCTTTGATTGCAAAAGAGGCCTTAAAGGAAATGAAACTTGGCAACATCAATGTCCCAAAAGGTGTTACAATTTGGGCTATGACATTGACCTCTCATACAGATCCAGAGCTGTGGGGATCTGATGCCTATAAATTCAAGCCAGAAAGATTTGTCAATGGAGTAAGTGGTGCATGTAAATTGCCACACATGTATATGCCCTTTGGGTTTGGTTTAAGATCGTGTCTTGGAAGAGATTTGGCTATGACTGAATTTAAGATGTTGTTGAGTCTTATTTTGTGTAATTTCTCTTTCACCCTTTCTTCTAATTATGTTCATTCACCTGCTCTTAAGTTGCTAATGGTGCCCAAACATGGAGTTCATTTGTTGGTAAAAAAGCTATCAACTACTCCTTAA 1581 0.3839 MVLQFDPRYLTSIALVGFVGLLVVLYNNLVVKPKRIRSKLSNQGINGPTPTFLLGNIREIMNACQLIITTTSKSPSSVVEVPHVHDTCPLTFPYLNIWKQKYGQMFLFSIGNNQILYVDKPEVVRDIVTCTSMDLGKPTYTNRELRPLLGRGILSSNGTTWAGQRKILAPEFYMEKVKEMMSIMGEYATSLLNQWNSIIEAQNGNADIKVDDYLVKFSGDVISRACFGRDYFKGQEIFSKLIALQEILSKNSLSVMIPGMRCLPTKDNREAKALEKELKNYILQLVKQREESPHHHNRDLLQMLLESTKNSDLTQHAIQTFIADNCKNIYFAGYETTAISMAWCLMLLASNQEWQDRVRTEALEICNGRIPDYHMLTKMKQLTMVIHETLRLYPPAPLIAKEALKEMKLGNINVPKGVTIWAMTLTSHTDPELWGSDAYKFKPERFVNGVSGACKLPHMYMPFGFGLRSCLGRDLAMTEFKMLLSLILCNFSFTLSSNYVHSPALKLLMVPKHGVHLLVKKLSTTP 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181701g00002 526 Pfam Cytochrome P450 98 509 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 SUPERFAMILY Cytochrome P450 88 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 Gene3D Cytochrome P450 31 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 Coils Coil 271 291 - -
Stsc181701g00002 526 PANTHER CYTOCHROME P450 FAMILY MEMBER 24 514 - -
Stsc181701g00002 526 PRINTS E-class P450 group I signature 341 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 PRINTS E-class P450 group I signature 99 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 PRINTS E-class P450 group I signature 217 235 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 PRINTS E-class P450 group I signature 470 493 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 PRINTS E-class P450 group I signature 321 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 PRINTS E-class P450 group I signature 460 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 PRINTS P450 superfamily signature 470 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 PRINTS P450 superfamily signature 461 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 PRINTS P450 superfamily signature 332 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181701g00002 526 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 463 472 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181701g00002 Stsc-Chr181701 8678 13278 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181701g00002 123 519 Cytochrome P450 AT5G24900 44.226 1.45e-123 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181701g00002 K24544 - qsu:112007252 640.958