Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181700g00009 ATGTCCCTCCGGAAACTTCACTTAACGAATTTCATTTCCAAAATTTCCCACACTTGGCAAAACCCTAGATTCCATAGCACGAATTCTGCACCCCAATCCAAACCAAAAAACTCTGATGTCAAGTTCCCGTCTAAGGTAAAAAGGGAAGCACAAGCCGCATTGCTTGAGTACCTTCATTCCACTAGGAGCTTGCAGTTCCTTGACGCAGACAACATGTGCAAAAACTCGCCTTTTTTCCTCGACGATATTCTGAGGAAGGTTCTTCAGATAAAGAAGATCGACCCAGGTGCCAATGGTGTCAAGAAATCAATCTCTCGTTATCTCCGTTACCACCCAATTAACGAGTTCGAACCATTCTTTGAGAGTGCGGGTTTGAAGCCTTTTGAATACTTGCACCTTCTTCCAAGGGACTTGATGTTCCTCCATGATGACACTCTCTTGATGGAGAATTACCATACTCTGTGTAACTATGGTGTTCCCAGGAACAAAATAGGGAAGATCTTCAAGGATGCACCTCAAGTTTTTAGATATGAAAGTGGAGTTTTGGGGTCCAAGTTTCAGAGTTATGAAGAGCTTGGTGTTGCTCCATCAACTTTGGTAAAGGTGATTTCTTTGAGCCCTATGGTTTTGGTTGGGGATGTTGACCTTTATTTCGTGAAGGTTTTGGAGAAGTTGAACCGTCTTGTTGGTGGAGAAAAGTGCTGTACTTGGATTGAGGAGCAGTTATTGGATGAGAGTAATTGTAATTTTGGGGTCATGCATGAGCTCCTGTGCTTGCTTGAGAAGGTTTACAGTGACAAAAAGTTGTTGGGTGAGATAATTACTCAGCACCCTTCTGTTGTTTTTGAGGATTCTGGAGTTCAGACATTGTCCCTCATTGTGTTCTTGGTGAAATTAGGCTTGTCCTTGGACCAGATAGCTATCGTTTTTGTCTTGTTTCCGCAAATTGGGATGTTGATGTTTCTATCGAATTTGCGCAAGTGTTTTACATTCCTTTCTGATATTGATATGCGTGCTGCGGAGATTGGGAAGATTTTCCAGTCTCATTCTTTGTTGATGGGTTCATTTACTATTAAGAAATGCAGTAGTTTGCTCGGTAGTTTGAATGTTGGAAAGAAAATGGTATGTAAGTTTGTGCAGGATAATCCAGAAGGGATGAAGAATTGGGCTGTGGGGAAGAAAATTGAGCCTTATCCAGAGGAAAAGAAAACAAAGGCTTTGAAAATAGAGTTCTTAAAGAAAGAGTTCTTGTTGAGCCTTGGATATGAAGAGAACTCTGAGGGAATAAAACAGGCTTTTAAGCTATTTAGAGGCAAGGGAGATGAGCTTCAAGAGAGATTCAATTTTATTGTTGATGCTGGCTTGGATGTTAAGGAGGTTCGCGAAATGATTAAGGCTTCACCTCAGATTCTTAATCAGACTACAGATATGATCAACATGAAAATTGAGTTCCTTTTGAATGAAGGATATCCTATATCAAGTTTAGTCAATTTCCCATCTTTTCTTTCATATACACTTTGTAGAGTTAAGCTTAGGTTATCAATGTATAATTGGCTCAGAGACCATCAAGTTGTTCACCCCATGCTTGCTTTGAGCACCATAGTTGCATGCTCGGAAGATATATTCTTACGGTTGTATGTAAATCGACATCCATCTGGCCTTCAAGTTTGGCAGGATTTGAAATCAGAAATTTATTCTGAGAGATAA 1707 0.4025 MSLRKLHLTNFISKISHTWQNPRFHSTNSAPQSKPKNSDVKFPSKVKREAQAALLEYLHSTRSLQFLDADNMCKNSPFFLDDILRKVLQIKKIDPGANGVKKSISRYLRYHPINEFEPFFESAGLKPFEYLHLLPRDLMFLHDDTLLMENYHTLCNYGVPRNKIGKIFKDAPQVFRYESGVLGSKFQSYEELGVAPSTLVKVISLSPMVLVGDVDLYFVKVLEKLNRLVGGEKCCTWIEEQLLDESNCNFGVMHELLCLLEKVYSDKKLLGEIITQHPSVVFEDSGVQTLSLIVFLVKLGLSLDQIAIVFVLFPQIGMLMFLSNLRKCFTFLSDIDMRAAEIGKIFQSHSLLMGSFTIKKCSSLLGSLNVGKKMVCKFVQDNPEGMKNWAVGKKIEPYPEEKKTKALKIEFLKKEFLLSLGYEENSEGIKQAFKLFRGKGDELQERFNFIVDAGLDVKEVREMIKASPQILNQTTDMINMKIEFLLNEGYPISSLVNFPSFLSYTLCRVKLRLSMYNWLRDHQVVHPMLALSTIVACSEDIFLRLYVNRHPSGLQVWQDLKSEIYSER 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181700g00009 568 Pfam mTERF 402 542 IPR003690 GO:0003690|GO:0006355
Stsc181700g00009 568 Pfam mTERF 259 414 IPR003690 GO:0003690|GO:0006355
Stsc181700g00009 568 PANTHER CGI-12 PROTEIN-RELATED 267 550 IPR003690 GO:0003690|GO:0006355
Stsc181700g00009 568 SMART mt_12 165 195 IPR003690 GO:0003690|GO:0006355
Stsc181700g00009 568 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Stsc181700g00009 568 SMART mt_12 461 491 IPR003690 GO:0003690|GO:0006355
Stsc181700g00009 568 MobiDBLite consensus disorder prediction 22 39 - -
Stsc181700g00009 568 Gene3D Transcription termination factor 3, mitochondrial 98 285 IPR038538 -
Stsc181700g00009 568 Gene3D Transcription termination factor 3, mitochondrial 286 560 IPR038538 -
Stsc181700g00009 568 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181700g00009 Stsc-Chr181700 39809 41515 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc181700g00009 mTERF 7.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181700g00009 - - lja:Lj1g3v4317450.1 628.246