Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181700g00007 ATGGCTCCGGGTGGAACTCCCACTCATAACCACAACAACCAACCACCTTCCTCCACTCTTGACTCCCTAAATGGCTTGAAATTCGGCAAAAAAATCTATTTTGAGGATTTGGGTCTCTCCACACCCTCAAACACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGCTGTTGCTGTTCCCAAGAAGGGTAGGGGCGGTTCGGTTCAGCATGCTCACCCACCGAGGTGCCAGGTTGAGGGTTGCAAAGCAGATCTGAGTGATGCTAAGGCTTATTATTCAAGGCACAAAGTTTGTGCCATGCACTCCAAATCCCCCACCGTCACTGTTTCTGGTCTCCAACAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGGAAAAGAAGTTGCCGCAGGCGACTCGCTGGCCATAACGAACGTCGGAGAAAGCCCCCACCATCCAGCAACCTCTTGACCTCTCGTTATGCAAGACTTTCTTCCTCACTTTATGATAATAGTGGCAAAGGTGGCAGCTTCCTGATGGAATTTGCTTCATACCCGAGGCTGGGTCTGAGAAACACACTTCCAAATCCAAGATCATCTGAACCAATCTCTGGAAACCAAACTTCAACACTTAACTGGCAGGGCTATTCAGAGATATCATCTGACCTTTTCTTGCAAGGTTCAGTGGGTGGGACAAGCTACCCCAATAATCTCAGACACCCTCCTCCTCCTTCGAGCGAAAGTTATGCTGGCGGCGTAGCAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGCCAACCATGGGGTTCTAGTAACATGGCACCAAGTCTCGGGTTGAATAGCATGTTGAATTTCAGTGCCACACAAATTGCTGCTTCATCCCATGGTGAATCCATCCATCAAGTTCCGAGTGCCTCGTGGTGTTTCAAGGACATCGATCCCGGTAACTGTTCAACCAAGGTTGTCCCTGATCTAGGCCTTGGTCAATTCTTGCAGCTTCCCAGCCAAGTTCCCGGGGAGTTTGATGCCCTGCAACAGGGTAGGAGGCATCATGTGGATCTTTGA 1077 0.4865 MAPGGTPTHNHNNQPPSSTLDSLNGLKFGKKIYFEDLGLSTPSNTSSSSSSSSSSSSSVAVAVPKKGRGGSVQHAHPPRCQVEGCKADLSDAKAYYSRHKVCAMHSKSPTVTVSGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSNLLTSRYARLSSSLYDNSGKGGSFLMEFASYPRLGLRNTLPNPRSSEPISGNQTSTLNWQGYSEISSDLFLQGSVGGTSYPNNLRHPPPPSSESYAGGVADSSCALSLLSSQPWGSSNMAPSLGLNSMLNFSATQIAASSHGESIHQVPSASWCFKDIDPGNCSTKVVPDLGLGQFLQLPSQVPGEFDALQQGRRHHVDL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181700g00007 358 MobiDBLite consensus disorder prediction 144 163 - -
Stsc181700g00007 358 Gene3D - 70 141 IPR036893 GO:0003677|GO:0005634
Stsc181700g00007 358 SUPERFAMILY SBT domain 78 157 IPR036893 GO:0003677|GO:0005634
Stsc181700g00007 358 MobiDBLite consensus disorder prediction 39 78 - -
Stsc181700g00007 358 FunFam Squamosa promoter-binding-like protein 14 71 141 - -
Stsc181700g00007 358 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 303 IPR044817 GO:0003677
Stsc181700g00007 358 ProSiteProfiles Zinc finger SBP-type profile. 77 154 IPR004333 GO:0003677
Stsc181700g00007 358 MobiDBLite consensus disorder prediction 39 61 - -
Stsc181700g00007 358 MobiDBLite consensus disorder prediction 237 256 - -
Stsc181700g00007 358 Pfam SBP domain 80 153 IPR004333 GO:0003677
Stsc181700g00007 358 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181700g00007 Stsc-Chr181700 30558 33647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181700g00007 26 357 SBP-box Gene Family AT2G42200 42.416 1.54e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc181700g00007 SBP 9.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181700g00007 - - ahf:112696101 543.502