Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181700g00006 ATGATCTGCGACTACCTTTATGTGCAACTCAACCTCGTCATCTTCTCCTCAATTTTGATATCTCAGGGTTTCGCATTCACTCCTCCAACCGAAGTATCAGCTCTGCAGGATCTATACAGGGCCTTGAACTACTCACCTCAGCTCCGAGGATGGAATGGTAGTGATCCATGTGAGGAGGATTGGAAAGGAATTGCTTGTTCCGGGTCATCAGTTATACACATAAAAATTTCTGGATTGAACCTCACTGGAAATCTTGGAAGCATGCTCCATGGTCTACTGAACTTGAAGGAACTTGATGTTAGTTCTAACAACATAGCTGGAGAAATGACATTTAGCTTACCACAAAATGCAAGACATATGAATTTAAGCCACAATCTCTTAAATGGACCCATTGGCGATGTATTTACTGGCCTGGATAATCTCAAATTAATGGACCTTTCATACAACAATTTCTCGGGAGACCTTCCAAGATCGTTTGGTTCCTTGAGAAATCTTGATAGATTGTTTCTGCAGAATAACGGATTTACTGGATCAGTCACCTACCTCTCTGAACTTCCACTTTCATATCTGAACATTCAAAACAATCTGTTTAGCGGCATTCTTCCATTCCACTTTCACACCATAAGGAATCTATGGATTGGAGGGAATAACTTCCTTTCAGTGGAAAACTCTCCTCCCTGGCCTTTTCCTCCGGACACTGTACCAGTACCAGTTGAGCATAACTTTAGTCACCCACCGATACACCCAGTTGAGCATAACTTTAGTCACCCACTGTTACATCCAGTTGAGCATAATTTTAGTCACCCACCAATCGCGATACACCCAGTTGAGCAGAACTTTAGTCACCCACCCATACACCCCGTTGAGCATAATACAACTGAGGCAAGTGTCATAAGGAACTATGCTCCTCCCCCTCCTAAAGTAAGTCATCACAAGGCAAAACATATGGGTCCTGGAGGAATAGCTTTTATGGTTGGTGCAGGAACACTAATGGCAACTGGTGTGGCACTCTTTGTTGCAATCCGTATAAGCAAAATGCGAGCAGAGATTCGAAGCTCAAAGGGCTTGGAAAGCGCCCATTTCTCTGTACATTCCCATCCAAGCAGTGCAACAATAGAGGTCTCTCCTACTGCTTTAGAAGAAAGCCCGCGAATCCCACTTTTTCATGCTGCATCCCTTATGGGATTGCCTACTCTGCACCACAACAATATAGACGAAGCTTCAAGAAGAAGTTTTTCCAGAAGAAGCAGATCCACCGGAAGGACGAAAGTTTACACCGTATCAGAGCTTCAGTTTGCTACTAACGGCTTCAATGAATGCAACATTCTGGGAGAGGGTTCTCTTGGCACTGTATACAGAGCCAAATTTCCTGGTGGCAAAATTCTGGCCGTGAAGAGCATAAACTTGGCGGGTGTGTCTTACAGAGAAGAGGAAAAGTTCTTGGATGTTATCTGCACGGCTTCCCGGTTGAAGCATCCGAACATAGTGGCACTGAATGGCTACTGTTTGGAGCGGGGAAAGCATCTTCTTGTGTATGATTATGTTAGAAATTTGACTCTACACGATGCTCTTCACAGAGACGTATACCAGCCTCTATCATGGATCCTCCGTCTCAGGATAGCTGTGGGCGTTGCTCTTGCTCTCGACTATTTGCACTCAGCATTCTCCCCACCTGTGGCCCATGGAAACTTGAAGGCAGCCAACGTTCTACTGGACGAGAATTTGATGCCCCGTCTTTCTGATTGTGGCTTGGCTGTTTTGAGACCACTTAGGAGCAATCAGGCTATCAAGTCTCCTGCTGCAGATTTAGGGTACCTTTCACCTGACCATGGCAGAGTAGGAGGTAGCAGCAGAAAGAAAGATGTGTTTGCCTTTGGGGTACTGCTTCTGGAACTGTTAACAGGAAGGAAAGCATTCGATGGTGCCAGGCCAACTGATGAGCAGTACCTAGTGAAATGGGCTTCACCAAGGCTTCATGATAACCCCAGTTTGGAGCAGATGGTAGATCCTTGTATGAAGAGGACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGCTATCGTCTCCCTCTGTATACAGCCTTCAAGGCATTTCCGTCCTCAAATGTCAGAAGTTGTGGACTCGCTTGTATCATTCTCACAAAAGTTCAACATACCAAAGGGCGGTGGCGTAGTTGCAGATGGTGACAACAATATTGAACTTGATTCGTTTGAGATATCTTTCCGTTCATCAAACACACGCTTCTTGGCTTCACCGGCATTCAGCCATTTATCCGCCTAA 2280 0.4518 MICDYLYVQLNLVIFSSILISQGFAFTPPTEVSALQDLYRALNYSPQLRGWNGSDPCEEDWKGIACSGSSVIHIKISGLNLTGNLGSMLHGLLNLKELDVSSNNIAGEMTFSLPQNARHMNLSHNLLNGPIGDVFTGLDNLKLMDLSYNNFSGDLPRSFGSLRNLDRLFLQNNGFTGSVTYLSELPLSYLNIQNNLFSGILPFHFHTIRNLWIGGNNFLSVENSPPWPFPPDTVPVPVEHNFSHPPIHPVEHNFSHPLLHPVEHNFSHPPIAIHPVEQNFSHPPIHPVEHNTTEASVIRNYAPPPPKVSHHKAKHMGPGGIAFMVGAGTLMATGVALFVAIRISKMRAEIRSSKGLESAHFSVHSHPSSATIEVSPTALEESPRIPLFHAASLMGLPTLHHNNIDEASRRSFSRRSRSTGRTKVYTVSELQFATNGFNECNILGEGSLGTVYRAKFPGGKILAVKSINLAGVSYREEEKFLDVICTASRLKHPNIVALNGYCLERGKHLLVYDYVRNLTLHDALHRDVYQPLSWILRLRIAVGVALALDYLHSAFSPPVAHGNLKAANVLLDENLMPRLSDCGLAVLRPLRSNQAIKSPAADLGYLSPDHGRVGGSSRKKDVFAFGVLLLELLTGRKAFDGARPTDEQYLVKWASPRLHDNPSLEQMVDPCMKRTFSSKALSRYAAIVSLCIQPSRHFRPQMSEVVDSLVSFSQKFNIPKGGGVVADGDNNIELDSFEISFRSSNTRFLASPAFSHLSA 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181700g00006 759 Gene3D Phosphorylase Kinase; domain 1 400 514 - -
Stsc181700g00006 759 Pfam Protein kinase domain 438 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181700g00006 759 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 119 - -
Stsc181700g00006 759 SUPERFAMILY Protein kinase-like (PK-like) 412 709 IPR011009 -
Stsc181700g00006 759 ProSiteProfiles Protein kinase domain profile. 437 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181700g00006 759 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 402 514 - -
Stsc181700g00006 759 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 712 IPR046959 -
Stsc181700g00006 759 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Stsc181700g00006 759 FunFam Leucine-rich repeat receptor-like protein kinase 515 720 - -
Stsc181700g00006 759 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 120 229 - -
Stsc181700g00006 759 Gene3D Transferase(Phosphotransferase) domain 1 516 720 - -
Stsc181700g00006 759 Gene3D Ribonuclease Inhibitor 27 230 IPR032675 -
Stsc181700g00006 759 Pfam Leucine rich repeat 117 174 IPR001611 GO:0005515
Stsc181700g00006 759 SUPERFAMILY L domain-like 35 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181700g00006 Stsc-Chr181700 25841 30047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181700g00006 10 759 Strubbelig Receptor Gene Family AT5G06820 45.812 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Stsc181700g00006 Pkinase 4.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181700g00006 - - gmx:100775254 907.901