Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181700g00002 ATGAGTCTCCAAAGCAACTTCTTGTCCATTTTGGTTCTCTTGGCTGCAGTTTTTGCATCTTTGCATCTCATAAATCCAAATGTAGAGTTCCTCAACATTTTCAAAGTCTTCACTATAACACCCTTCTCATCATCATCATTATATTCATATGCATATTTGCCACTACCTTATATATGCATCTTCTTCAGAGGCCATAATCATCATCATCATCATCATAAGAAACACCCTGATGAGGATAGTGGAAATGCTGGTTCCATTTGTGATGATTTTCCACCAGGGATTCCACCTCCAAGCACCAACACCACTTCTTATCTTTGTGTTGATCAAAAAGGTTGCTGCAATTTCACAACAGTTCAAGCAGCCGTTAATGCAGTTCCAGACTTCAGCCAAAAGAGAACCATAATATGGATTAACAAGGGCATATACTATGAGAAAGTAATGGTCCCAAGAACCAAAGCCAACATTACATTCCAAGGACAAGGTTACACTTCAACCGCAATTGCATGGAACGATACAGCAAAGTCAGCAAATGGCACATTTTATAGTGGTTCCATACAAGTCTTTGCATCCAACTTCATTGCCAAGAACATAAGCTTCATGAACTTGGCACCAATGCCTAGTCCTGGAGTTGAAGGAGCACAAGCAGTGGCAATCAGAATATCAGGAGATCAAGCTGAATTCAAGGGTTGTGGATTCTTTGGAGCACAAGACACCCTTCATGATGATAAGGGCCGCCATTACTTCAAGGATTGCTATATCCAGGGCTCAATTGATTTCATATTCGGCGATGGAAAGTCTCTTTACGAGAATTGTCAAATAGTTTCTATAGCAAATCCAGTTCCACAAGGATACAGGAGCATAAATGGTGCAGTGACAGCTCATGGAAGAGTATCCATGGATGATAACACAGGATTTGTGTTTGTGAACTGTACGATTGGAGGGAGTGGGAGAATATGGTTAGGAAGGGCTTGGAGACCCTATTCACGTGTTGTTTTTGTGTCAACAACAATGTCAGATATCATTGCCCCTGAAGGTTGGAACGATTTCAATGACCCTGCAAGGGATCAGAGCATATATTATGGAGAATACAATTGCTCTGGTCCTGGAGCTAGCATGGGTATGAGGGCACCATATGTACAGAGATTAAACGATACACAAGCTCTTCCATTCCTCAACATAACTTTTATCGATGGTGACCAATGGTTGGAATCTTACAAACAATTAATAACTTAA 1233 0.4079 MSLQSNFLSILVLLAAVFASLHLINPNVEFLNIFKVFTITPFSSSSLYSYAYLPLPYICIFFRGHNHHHHHHKKHPDEDSGNAGSICDDFPPGIPPPSTNTTSYLCVDQKGCCNFTTVQAAVNAVPDFSQKRTIIWINKGIYYEKVMVPRTKANITFQGQGYTSTAIAWNDTAKSANGTFYSGSIQVFASNFIAKNISFMNLAPMPSPGVEGAQAVAIRISGDQAEFKGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGDGKSLYENCQIVSIANPVPQGYRSINGAVTAHGRVSMDDNTGFVFVNCTIGGSGRIWLGRAWRPYSRVVFVSTTMSDIIAPEGWNDFNDPARDQSIYYGEYNCSGPGASMGMRAPYVQRLNDTQALPFLNITFIDGDQWLESYKQLIT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181700g00002 410 Gene3D - 98 408 IPR012334 -
Stsc181700g00002 410 FunFam Pectinesterase 99 407 - -
Stsc181700g00002 410 SUPERFAMILY Pectin lyase-like 103 403 IPR011050 -
Stsc181700g00002 410 ProSitePatterns Pectinesterase signature 2. 253 262 IPR033131 -
Stsc181700g00002 410 Pfam Pectinesterase 106 399 IPR000070 GO:0030599|GO:0042545
Stsc181700g00002 410 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 93 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181700g00002 Stsc-Chr181700 11551 13129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181700g00002 78 403 Carbohydrate Esterase AT1G05310 71.472 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181700g00002 - - ahf:112696095 786.178