Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181698g00002 ATGACCCTTGCTCTTCAAGGAAACAATCTCTCAGGAGCTATTCCTGACACAGTTGGAAAGCTGAAAAGCCTCTACTCTCTAGAGTTGTCCACCAACAAACTCAGTGGCACCATTCCACAGGTTATGAATAACCTTACCAACATGGTATACTTTCTGGTGGGAGAAAATGATCTCAGTGGCCACTTGCCACCTCAAATTTGCTTAGGTGGTTCATTGGGATACTTGCTTGCTAATGACAATCATTTTAGTGGTCCAATACCAAGTAGCTTGAAGAACTGCTCTAATCTTGCTAGAGTAAGGTTAGAGAATAACCATTTGGAAGGAGATATAACACAAGACTTTGGCATTTATCCTAATTTGAAATTCATTGATCTGAGTGGCAATAAATTGTATGGTCAAATTTCTCCAGATTGGGGCAAGTGCCAAAATCTTGAAAACTTGATATTATCCAACAACAATATTTCTGGTGGCATACCATTAGAAATTGTTGAACTTACCAAGTTGGGCAGGCTTCACCTTTTTTCCAACCAATTAACCGGAACGATTCCGAAAGAATTGGGAAGTATGAAAAGCCTACTTGAATTCAAGATCAGTGACAACCTTTTCTCAGGAAATATTCCAGCAGAAATAGGACTTTTGCATGATCTTCAAATCTTGCACCTTGGTGGAAATGAGTTGAGTGGGAATATACCAGGACAAGTTGTGCATTTACCCAAGTTGTTGGAATTGAACTTGAGCAACAACAAACTAGAGGGAAGCATCCCCTCTGAGTTTCACAAAATGCAACCTCTCTATTCTCTTGATCTTAGTGGGAATTTGTTGCATGGACAAATACCAACTGTGCTTGGAGAGTTGAAACAATTGCAATGGCTGAACCTCTCTCACAACAATCTCTCTGGCAATATTCCATCAAGTTTTAATGGCATGTCAAGCTTGACTTGTGTCAACATATCATATAATCAGTTAGAAGGGCCGCTTCCGACCAACAACCGAGCCTTTCAGAATGCTACAATTGAATCATTGAAAAATAACAAAGGCTTGTGTGGTAATGTCACTGGCTTGGTGCCATGCCCAAGTAGAAGTCCTAGCCACAAACACAAGGTCATATTATTGGTTTTACTTGTTATCTTTGGAGTACTAATACTTGTGCTTTGTGTGGTGGCTGTTTCATTTTATATGCTTTGTAAAAGTGCCAGAAACAAACAAGACTCAGCTAAAGGAGTGCAACAATTGGAAGAAAACTTTTCCATATGGAGTCATGATGGGAAAATGGCGTTTGAAACAATCATTGAAGCTACCAATAATTTTGATGACAAATATCTCATTGGAATTGGAGGGCAAGGATGTGTCTACAAGGCTGAGTTGCCTTCAGGTATGGTTGTTGCTGTGAAGAAACTTCATGCAGAATCAGATGCAGAGGACAAGTCCAATTTGAGAGCATTTGAGAATGAGATTGAAGCATTGACAGAAATGAGGCACCGAAACATCATAAAGCTATATGGATTTTGCCAGCATTCACGGTTCTCATTTTTGGTTTATGAATTCTTGGAAGGTGGCAGTTTGGATCAACTACTTGCCAATGAAAACCAAGCAGTTACATTTGATTGGGGGAAGAGGGTGAAAGTGGTTAAAGGAGTTGCTAATGCTTTGTCATACATGCATCATGATTGCAAACCCCCTATTGTTCATCGCGACATATCAAGCAAGAACATTCTTTTGGACTCAGAATATGTGGCTCATGTTTCTGACTTTGGGACTGCTAAGTTTTTGAAGCCAGATTCAAATTGGACAACACTTGCAGTCACCTATGGTTATGCAGCTCCAGAGCTAGCACAGACTATGGAAGTCACAGAGAAGTGTGATGTATATAGCTTTGGAGTGCTTTGTTTGGAGATCATGATGGGAAAGCATCCAGGAGATCTGATCAACTCATTGTTGTCACCATCAACAGCATCAATAACATACAATCTGTTATTGGTTGATGTCATAGATCAGAGGCCTCCTCATCCAAAGAATTCAGTGGCTGGGGAGATCATGTGGATCACAAAGTGGGCACTTGAGTGCTTGAGCCACAATCCAGAATATCGACCAAGCATGCATCAAGTGTCCAAAGAGCTTATGATGGGAAAAGCACCATTAGCTGAACAATTTGGTATGATTAGAATTGGACAACTAAATGAAGAATGGGAAACACCACTAATGTGA 2205 0.4027 MTLALQGNNLSGAIPDTVGKLKSLYSLELSTNKLSGTIPQVMNNLTNMVYFLVGENDLSGHLPPQICLGGSLGYLLANDNHFSGPIPSSLKNCSNLARVRLENNHLEGDITQDFGIYPNLKFIDLSGNKLYGQISPDWGKCQNLENLILSNNNISGGIPLEIVELTKLGRLHLFSNQLTGTIPKELGSMKSLLEFKISDNLFSGNIPAEIGLLHDLQILHLGGNELSGNIPGQVVHLPKLLELNLSNNKLEGSIPSEFHKMQPLYSLDLSGNLLHGQIPTVLGELKQLQWLNLSHNNLSGNIPSSFNGMSSLTCVNISYNQLEGPLPTNNRAFQNATIESLKNNKGLCGNVTGLVPCPSRSPSHKHKVILLVLLVIFGVLILVLCVVAVSFYMLCKSARNKQDSAKGVQQLEENFSIWSHDGKMAFETIIEATNNFDDKYLIGIGGQGCVYKAELPSGMVVAVKKLHAESDAEDKSNLRAFENEIEALTEMRHRNIIKLYGFCQHSRFSFLVYEFLEGGSLDQLLANENQAVTFDWGKRVKVVKGVANALSYMHHDCKPPIVHRDISSKNILLDSEYVAHVSDFGTAKFLKPDSNWTTLAVTYGYAAPELAQTMEVTEKCDVYSFGVLCLEIMMGKHPGDLINSLLSPSTASITYNLLLVDVIDQRPPHPKNSVAGEIMWITKWALECLSHNPEYRPSMHQVSKELMMGKAPLAEQFGMIRIGQLNEEWETPLM 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181698g00002 734 FunFam Leucine-rich repeat receptor protein kinase MSP1 398 515 - -
Stsc181698g00002 734 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 46 361 - -
Stsc181698g00002 734 SUPERFAMILY Protein kinase-like (PK-like) 416 706 IPR011009 -
Stsc181698g00002 734 Gene3D Ribonuclease Inhibitor 1 359 IPR032675 -
Stsc181698g00002 734 Pfam Leucine Rich Repeat 239 260 IPR001611 GO:0005515
Stsc181698g00002 734 Gene3D Phosphorylase Kinase; domain 1 395 515 - -
Stsc181698g00002 734 SMART LRR_typ_2 237 260 IPR003591 -
Stsc181698g00002 734 SMART LRR_typ_2 285 308 IPR003591 -
Stsc181698g00002 734 SMART LRR_typ_2 21 45 IPR003591 -
Stsc181698g00002 734 SMART LRR_typ_2 165 189 IPR003591 -
Stsc181698g00002 734 Pfam Protein kinase domain 438 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181698g00002 734 FunFam MDIS1-interacting receptor like kinase 2 516 712 - -
Stsc181698g00002 734 ProSiteProfiles Protein kinase domain profile. 436 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181698g00002 734 PANTHER LEUCINE RICH REPEAT KINASE 2 3 711 - -
Stsc181698g00002 734 SUPERFAMILY RNI-like 3 338 - -
Stsc181698g00002 734 ProSitePatterns Tyrosine protein kinases specific active-site signature. 561 573 IPR008266 GO:0004672|GO:0006468
Stsc181698g00002 734 Gene3D Transferase(Phosphotransferase) domain 1 516 716 - -
Stsc181698g00002 734 Pfam Leucine rich repeat 264 322 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181698g00002 Stsc-Chr181698 7316 9813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181698g00002 1 608 Receptor kinase-like Gene Family AT4G08850 47.334 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc181698g00002 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181698g00002 - - ahf:112744368 1065.06