Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181697g00002 ATGACGAATCATGAGAGTAATGTGGTAGGTCCTGATGTGATGCTAATTGCATTAGCAGCATCCATCCCAAATGCAGCTGTTCTTGGAGGCTTTCTCAAAGGATTCAATGACACTTCCAAACTTAACAATTTGATTGATTCAATGAGAGCTTCTTCTCCAACTCGCACCAGATCCTCCTCATCCTCATCCTTAGCTAATAATAACAACAATGCTTCTGATAACCAAGACAACATTAATTCTTGGATGGTTTATCATCCTTCAGCTCTGAACATGTTTGATCAGATAGTATACAACATGAAAGGGAAGAAGATTGTAACGTTTCTTGACTACGATGGAACTCTTTCCCCAATTGTTGCGGATCCTGATAAGGCTTTCATGACTAAAAAGATGAGAGCCACTCTCAAGGACATAGCAAGGCATTTCCCCACCGCAATCGTCACCGGTAGGTGCAGGGACAAGGTGTATAGCTTTGTGAAATTGGCAGAACTTTATTACGCAGGAAGCCATGGCATGGACATAAAGGGGCCAACAAAAAGCAGAAATCCAAATAAAGGAAATGATAAAGCAGTTCTTTGCCAACCTGCAAGTAAATTCCTACCTATGATAGAAGAGGTGTACAAGATCTTATTAGAAAAAACAAAGAGTGTCCCAGGGGCTAAGGTAGAGAACAACAAGTTCTGTTTGTCCGTGCACTTTCGTTGTGTTGACGAAAAGTGTTGGGCTGCATTGGCGGAACAAGTAAGATTGGTGCTGAATGAGTACCCAAAATTGAAGCTAACCCAAGGAAGAAAGGTCCTAGAGATCCGTCCTACCATCAAATGGGACAAGGGCAAAGCTCTTGAATTCTTGCTGGAATCACTTGGATATGAGAATTCCAATGACGTTTTCCCAATCTATATTGGCGATGATCGTACAGACGAGGATGCTTTTAAGGTTTTGCGCAATAGAGGTCAAGGGATTGGGATTCTTGTTTCTAGAGTTCCAAAAGACACAGAAGCTTCATACACCTTGAAAGATCCAGTAGAGGTTGAGCAATTTTTGCGGCGTCTAGTGGAATGGAAAAGATCGAGTAACCAGTGA 1080 0.4194 MTNHESNVVGPDVMLIALAASIPNAAVLGGFLKGFNDTSKLNNLIDSMRASSPTRTRSSSSSSLANNNNNASDNQDNINSWMVYHPSALNMFDQIVYNMKGKKIVTFLDYDGTLSPIVADPDKAFMTKKMRATLKDIARHFPTAIVTGRCRDKVYSFVKLAELYYAGSHGMDIKGPTKSRNPNKGNDKAVLCQPASKFLPMIEEVYKILLEKTKSVPGAKVENNKFCLSVHFRCVDEKCWAALAEQVRLVLNEYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLRNRGQGIGILVSRVPKDTEASYTLKDPVEVEQFLRRLVEWKRSSNQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181697g00002 359 Pfam Trehalose-phosphatase 107 340 IPR003337 GO:0003824|GO:0005992
Stsc181697g00002 359 FunFam Trehalose 6-phosphate phosphatase 201 359 - -
Stsc181697g00002 359 NCBIfam trehalose-phosphatase 101 351 IPR003337 GO:0003824|GO:0005992
Stsc181697g00002 359 MobiDBLite consensus disorder prediction 48 76 - -
Stsc181697g00002 359 FunFam Trehalose 6-phosphate phosphatase 104 191 - -
Stsc181697g00002 359 CDD HAD_TPP 107 343 - -
Stsc181697g00002 359 SUPERFAMILY HAD-like 107 353 IPR036412 -
Stsc181697g00002 359 NCBIfam HAD-IIB family hydrolase 107 315 IPR006379 -
Stsc181697g00002 359 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 37 358 IPR044651 GO:0004805|GO:0005992
Stsc181697g00002 359 Gene3D - 222 359 IPR023214 -
Stsc181697g00002 359 Gene3D - 104 197 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181697g00002 Stsc-Chr181697 36278 38545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181697g00002 100 358 Trehalose Biosynthesis Gene Families AT1G06410 26.087 6.74e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181697g00002 K01087 - gmx:100788641 507.294