Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181696g00002 ATGGCAGTTCCTGGGCATATATTTGAGATGGTTCATCCAGCAAATAGTGATAATGAGTTTTGCCTTTACATAATAAGGCTTTGGGAATCTCCTAGCAAATACAATACGAAGGACATACAGAGCATTGAAATGGTTGTTGAAGATTGCAAGAGGCAGAGGACCCATGTTTCAGTGCCTAAAGGGTTGTTAAAAAGATGGAGGGTTAATTTGCACGAATTCAAGTGTTACAGGATCAAGAATCTTATGGTTGTTGATCCTAAGATGAAACCAAAGCTGAGGACCATTCCATGTATTTGGTATCTAGCGTTCTCCCATCGAACAACAGTCCAGATTCTGGAGCCGGTTATCTTCCCCTGTAATCTTTTCCGATTCAGGACTGTGCTTGAACTGAATGATAAGGATGTTGTGTTGACTAACGACACTTTTGATTTCATTGGAGAGGTTGTGAAAAAAGAGGATCCTAGAGATGTAGTAACCAACACTGGATTAAGAACAAAACGAGTGGTTGTTGTGCTGCAGGATACTGAGTTAATTGCTCCTTATCTTGAGAAGCCACAGGAGGAGCCCTTGGTTGTTATTCTTCAATACTTCAAGGTTTCTAGGTGGAATGGTAAAACATCTGTGCAGAGTAACTTTGAGCTGTCAAAGGCTTATATCAATGCTGAATTCAAGGAGGTGGTCGAATTCAGGAACAGGTTGGAAACTAATGGGCCAACATTGTCTGGTAGGATTAGCCAGGTTCAGTCTGAGGGAGCTTCGACAGGTGCTAAGGAGCTTATAAATGGAAGGGCCACTGTGCATACCATAAAGGAAGTTTCAATGCTAACTAAGCAATGCCAGCCATGGATATCCGTTGAAATTATGGCTTTGAATGTTGGAAGCAATGACTGGTGGTACACTGCGTGTGGAGGTTATGCAAAGAAGGTCGGACCTCAAGAGGGGAGCAGCTCCGACACCAAACGTTGCGATAAAGATGATGGGGAACGTACTGAAAGGTATAAGGTGGAGGCAATAGCTCATGACAATATTGGCTGCATAAATTTGTTGATGTGGGACAGGGAAGCCAAGAAGTTATGTGGGAAGTTAGCTGAGGATGTGAAAAAAGAGAAGATTGAGGCTGAAGATGATTATCCTCCAAGTCTGAACAACATGTTGGAAAGGAAGCTTCTCTTCAAGATTCACGTCAAGAATTCAAATATTAATGAAGTTGATACTGTGTTCCCTGTGATAAAGCTAATTGACGACAAGGACCTCATTACCAGGTTCACACCAGCGAACAAACCTCCTTTGCAAGGAAGTCTTGAGGCGGGGAACATAAGCAACTTATCTACTGAACTTAGTGGGAGTGCCATCAATCTTATGGCTGATAGCTATCCTCAGTATAGTGTGGGTGATGTGGACGAAGCTGTTTCAACCATCAAAGCCAAAATTCCAGCTAAGACAGATCCCCCCGGTTGA 1458 0.428 MAVPGHIFEMVHPANSDNEFCLYIIRLWESPSKYNTKDIQSIEMVVEDCKRQRTHVSVPKGLLKRWRVNLHEFKCYRIKNLMVVDPKMKPKLRTIPCIWYLAFSHRTTVQILEPVIFPCNLFRFRTVLELNDKDVVLTNDTFDFIGEVVKKEDPRDVVTNTGLRTKRVVVVLQDTELIAPYLEKPQEEPLVVILQYFKVSRWNGKTSVQSNFELSKAYINAEFKEVVEFRNRLETNGPTLSGRISQVQSEGASTGAKELINGRATVHTIKEVSMLTKQCQPWISVEIMALNVGSNDWWYTACGGYAKKVGPQEGSSSDTKRCDKDDGERTERYKVEAIAHDNIGCINLLMWDREAKKLCGKLAEDVKKEKIEAEDDYPPSLNNMLERKLLFKIHVKNSNINEVDTVFPVIKLIDDKDLITRFTPANKPPLQGSLEAGNISNLSTELSGSAINLMADSYPQYSVGDVDEAVSTIKAKIPAKTDPPG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181696g00002 485 PANTHER OS03G0429900 PROTEIN 11 464 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc181696g00002 485 SUPERFAMILY Nucleic acid-binding proteins 262 406 IPR012340 -
Stsc181696g00002 485 Gene3D - 117 241 IPR012340 -
Stsc181696g00002 485 Pfam Replication factor-A C terminal domain 282 404 IPR013955 -
Stsc181696g00002 485 Gene3D - 8 111 IPR012340 -
Stsc181696g00002 485 Gene3D - 245 420 IPR012340 -
Stsc181696g00002 485 SUPERFAMILY Nucleic acid-binding proteins 137 241 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181696g00002 Stsc-Chr181696 14488 16924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181696g00002 191 414 Core DNA Replication Machinery Family AT4G19130 23.404 4.87e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181696g00002 - - aip:107630584 352.058