Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181694g00005 ATGGTTAGCGAAGACCTAAAACGAAGCCCCAGAAGCCTAAAGAACCTTGCAACTGACGGAAACGGCCAAACCCAAAACCATGACAGTGGCGTTTTCAGCCCGCGATTCAAATCTGCTGCAGCTATGGCCGGGTGGGATGAAGAGGCACTGCTTCTCGCTAGCCTCATCGTCGAAGACACACCCGATAGAGATTTCAAGCACAAGAAGCGCTCTGTCTTTAACTCCAAGACTCCACCCTCCAATTCAAGAAGGAAACGAATAGCGCAGAGTACTTCAGAATCGATCCGAGTGGCTGTTCTTGATCTTGACGAAGAAGACACTGCAAAAAAAGATAGTGAGAAAAATACCAAAGAAAAGAAGCTTACTGTAAACGAAGAGAGTAAAGAAGGAGGGAAGGAATCCGATGTTTCTTCCTCCGGTGCTGCACTTCCCTGTATTGATAAGCTCAGGGACGAGCTTTCTTGCGCGATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAAAAAGTGCCTTCGGTCTGCTGCAGACAAATGTGGCAAAAAATGCCCAAAATGCAGGCAATTAATAGGCATCGGAAGATCATGCACTGTGAATACTGTTCTCTGGAATACAATACAGCTTCTGTTTCCCCAAGAAGTCAAAGCAAGGAAAGCCGCCGGCACCATAAATAGCCGGCAAGAATCTAAGTGCCTGAGTCCAGAAACAGCCTTTTATAACAATCTAAGGAATGGTGAAAGCACAACAACCAGAGGTGGTGTAAGTACAAGGCGAAGCAGCGGCAGGGCTGCCATGGTAACCGATCAGGGAGCTGCAGTGGCAATGAGGATTCTAAGAGAGGATGATGGGGTGGGACTGCTGCTACAGACCAGGCGGCCACGGCTTCATCTTGTGAGACCAAGAAGAGAGATTCCTCCTGCTACACAAAATGAGGATGCAGCATTGGCTCTGAGGCTACAGAGAGAGGAGTTTATTCAGGCCTTTAGGGGAACACAGGAACAAAACTATTCAAGCCGATCCTCATCTGTGAATTCATCAGCTAGAGAAAATTTGAGGGCAATGGCATCCAGAGCCATGAATCTTCGCATTAGAGATCAAAGATTGTGA 1128 0.4725 MVSEDLKRSPRSLKNLATDGNGQTQNHDSGVFSPRFKSAAAMAGWDEEALLLASLIVEDTPDRDFKHKKRSVFNSKTPPSNSRRKRIAQSTSESIRVAVLDLDEEDTAKKDSEKNTKEKKLTVNEESKEGGKESDVSSSGAALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKKCPKCRQLIGIGRSCTVNTVLWNTIQLLFPQEVKARKAAGTINSRQESKCLSPETAFYNNLRNGESTTTRGGVSTRRSSGRAAMVTDQGAAVAMRILREDDGVGLLLQTRRPRLHLVRPRREIPPATQNEDAALALRLQREEFIQAFRGTQEQNYSSRSSSVNSSARENLRAMASRAMNLRIRDQRL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181694g00005 375 Pfam Zinc finger, C3HC4 type (RING finger) 155 193 IPR018957 GO:0046872
Stsc181694g00005 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 224 IPR013083 -
Stsc181694g00005 375 MobiDBLite consensus disorder prediction 106 133 - -
Stsc181694g00005 375 MobiDBLite consensus disorder prediction 1 32 - -
Stsc181694g00005 375 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Stsc181694g00005 375 SMART ring_2 155 193 IPR001841 -
Stsc181694g00005 375 ProSiteProfiles Zinc finger RING-type profile. 155 194 IPR001841 -
Stsc181694g00005 375 SUPERFAMILY RING/U-box 147 218 - -
Stsc181694g00005 375 MobiDBLite consensus disorder prediction 68 92 - -
Stsc181694g00005 375 MobiDBLite consensus disorder prediction 74 92 - -
Stsc181694g00005 375 PANTHER UNCHARACTERIZED 310 367 - -
Stsc181694g00005 375 MobiDBLite consensus disorder prediction 106 139 - -
Stsc181694g00005 375 MobiDBLite consensus disorder prediction 14 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181694g00005 Stsc-Chr181694 17479 19725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181694g00005 91 215 C2H2 Transcription Factor Family AT5G39550 31.250 7.54e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181694g00005 - - qsa:O6P43_004759 426.017