Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181693g00004 ATGGCTCAACTGGAATTAGGGTTTCTCTGGCAATTCCCCTCGTTCCCAACTGCAGAAGTTCTCGGCTACCTCACTTCCGTAACCATGACTAAGAGAACGAAGAAGGCTGGTATTGTTGGAAAATACGGTACCCGTTATGGAGCTAGTTTGCGTAAGCAGATTAAGAAGATGGAAGTTAGTCAACACAGCAAATTTTTCTGTGAATTCTGCGGAAAGTATGCTGTGAAGAGGAAGGCCGTAGGAATATGGGGATGCAAGGACTGTGGTAAAGTGAAAGCCGGTGGCGCCTACACTTTGAATACTGCGAGTGCTGTGACCGTCCGGAGCACTATTAGAAGGTTGAGGGAACAAACTGAGAGTTAA 363 0.4656 MAQLELGFLWQFPSFPTAEVLGYLTSVTMTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181693g00004 120 NCBIfam ribosomal protein eL43 29 119 IPR002674 GO:0003735|GO:0005840|GO:0006412
Stsc181693g00004 120 PANTHER ZGC:171772 25 120 - -
Stsc181693g00004 120 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 32 100 IPR002674 GO:0003735|GO:0005840|GO:0006412
Stsc181693g00004 120 Gene3D - 29 120 IPR011331 GO:0003735|GO:0005840|GO:0006412
Stsc181693g00004 120 Pfam Ribosomal L37ae protein family 32 116 IPR002674 GO:0003735|GO:0005840|GO:0006412
Stsc181693g00004 120 FunFam 60S ribosomal protein L37a 30 120 - -
Stsc181693g00004 120 SUPERFAMILY Zn-binding ribosomal proteins 38 110 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181693g00004 Stsc-Chr181693 17381 19041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181693g00004 29 120 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 93.478 5.40e-60 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181693g00004 K02921 - twl:119982996 191.43