Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181688g00002 ATGATTGTTTTGAAACTAGAACAGGTCCCTTCGCGGCTGTCGGATTTGTCGAGCCACCCGTGTTTCGGGAAGAATGCACTTTGCAAGGAGCAGTTGCAGGCAGTCACAAGGACTCTAAAGGAATCAATTGAATTGGCTGAGATTTGTGTGAAGGACAAGTTTGAAGGTAAGCTTAAGATGCAGAGTGATCTTGATTCTTTAGCTGCGAAATTGGATTTGAATTTGAGGGATTGTGGCCTACTCATCAAGACCGGTGTCCTTGGCGAGGCGACTCTACCGTTGCCGGATGCTGCTGCTTTGCACGGCAGCATCCGGGAGTTGCTTGCTCGCCTCCAGATCGGTCATCTGGAGGCGAAGCATAAAGCTTTGGATAATCTTGTTGAAGCAATGAGGGAAGATGAAAAGAAAGTTTTGGTGGTTATGGGGAGAAGCAACATTGCTGCTTTGGTTCAGTTGCTGACTGCCACTTCTCACAGGATAAGAGAGAAGGCGGTTACAGTTATATGCTCGCTGGCGGAATCCGGTAGCTGTGAGAATTGGTTAGTCTCTGAAGGCGTTCTGCCACCTCTTATAAGGCTTGTTGAGTCTGGTAGTTTTGTGGGAAAAGAGAAGGCTGCAATTTCTCTTCAGAGGCTGTCAATGTCGGCCGAAACGGCCCGTGAAATCGTTGGACACGGCGGGGTTAGGCCGTTGGTTGAGCTTTGTCAAACCGGTGATTCGGTGTCACAATCCGCGGCTGCTTGTACACTGAAGAATATTTCGGCTGTTCCGGAGGTTAGACAAGCTTTGGCTGAAGAAGGGACCGTTAAAGTAATAATCAATTTGCTTAACTGCGGAATTCTGTTGGGATCCAAAGAGTATGCGGCCGAGTGCTTGCAGAATCTAACTGCAAGCAATGAGAATCTTCGGAGGAATGTCATAGCCGAAGGCGGCGTTATGAGCCTTCTAGCTTATCTTGATGGTCCACTGCCTCAAGAATCCGCCGTCGGCGCGTTGAGGAACTTGGTAGGATCTGTCCCGGAGGACAAACTCATTTCGCTGGGCTTCCTACCGAGATTGTGTCACGTGCTAAAATCCGGTTCCCCGGGAGCTCAGCAGGCGGCTGCAGCCGCAATCTGCCGAATCTCGAGCACATTAGAGTTGAAAAAGCTGGTTGGTGAAGTTGGATGCATACCTCACCTTGTAAAGATGCTGGAGGCGAAATCAAGCAGCGCTAGGGAGGTGGCGGCGCAGGCAATAGCGAGCCTAATCAGCTTGTCGCGGAATCAGAGAGAAGTGAAGAAGGATGACAAGAGTGTTCCAAACTTGGTTCAGTTGCTTGATCCAAGTCCACAGAACACTGCAAAGAAATATGCAGTTTCATGCTTAGGATCACTCTCTTCATGCAAGAAATGCAGGAAGCTTATGATCTCTTATGGGGCAATTGGGTATCTGAAGAAACTCACTGAGATGGATATTCCAGGAGCTAAGAAACTTCATGAGAAATTGGAAAAAGGGGATTTTAGAAGCTTGTTTAGCAAGAAATAG 1527 0.4833 MIVLKLEQVPSRLSDLSSHPCFGKNALCKEQLQAVTRTLKESIELAEICVKDKFEGKLKMQSDLDSLAAKLDLNLRDCGLLIKTGVLGEATLPLPDAAALHGSIRELLARLQIGHLEAKHKALDNLVEAMREDEKKVLVVMGRSNIAALVQLLTATSHRIREKAVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSFVGKEKAAISLQRLSMSAETAREIVGHGGVRPLVELCQTGDSVSQSAAACTLKNISAVPEVRQALAEEGTVKVIINLLNCGILLGSKEYAAECLQNLTASNENLRRNVIAEGGVMSLLAYLDGPLPQESAVGALRNLVGSVPEDKLISLGFLPRLCHVLKSGSPGAQQAAAAAICRISSTLELKKLVGEVGCIPHLVKMLEAKSSSAREVAAQAIASLISLSRNQREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSSCKKCRKLMISYGAIGYLKKLTEMDIPGAKKLHEKLEKGDFRSLFSKK 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181688g00002 508 Gene3D - 384 497 IPR011989 -
Stsc181688g00002 508 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 2 506 - -
Stsc181688g00002 508 Gene3D - 98 280 IPR011989 -
Stsc181688g00002 508 Gene3D - 281 383 IPR011989 -
Stsc181688g00002 508 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 389 425 IPR000225 GO:0005515
Stsc181688g00002 508 SMART arm_5 131 173 IPR000225 GO:0005515
Stsc181688g00002 508 SMART arm_5 338 377 IPR000225 GO:0005515
Stsc181688g00002 508 SMART arm_5 420 461 IPR000225 GO:0005515
Stsc181688g00002 508 SMART arm_5 215 255 IPR000225 GO:0005515
Stsc181688g00002 508 SMART arm_5 378 418 IPR000225 GO:0005515
Stsc181688g00002 508 SMART arm_5 256 297 IPR000225 GO:0005515
Stsc181688g00002 508 SMART arm_5 298 337 IPR000225 GO:0005515
Stsc181688g00002 508 Pfam Armadillo/beta-catenin-like repeat 341 377 IPR000225 GO:0005515
Stsc181688g00002 508 Pfam Armadillo/beta-catenin-like repeat 380 416 IPR000225 GO:0005515
Stsc181688g00002 508 Pfam Armadillo/beta-catenin-like repeat 219 255 IPR000225 GO:0005515
Stsc181688g00002 508 Coils Coil 113 136 - -
Stsc181688g00002 508 SUPERFAMILY ARM repeat 99 485 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181688g00002 Stsc-Chr181688 8323 11494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181688g00002 258 484 U-box Gene Family AT2G23140 29.741 3.76e-09 57.4