Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181688g00001 ATGGCAGAAACTGAAGATAAGAAACATGATCCTCCTCCACCAACAACAACCACTGATGAGGAAGCCACCGTCGTCGTCACTGCAGACACGAATAACAAGAACATAGGTCATCAGCAAACAAATAATAAATCAAGCAACAACAACATGATGAGAAGGTTCATAGGTGTGAGGCAAAGGCCCTCAGGGAGATGGGTGGCAGAGATTAAAGACTCATCTCAACATGTAAGACTATGGCTTGGTACATATGATTCACCTGAAGAAGCTGCTAGGGCTTATGATGAAGCTGCTAGAGCACTTCGTGGGGACAATGCAAGAACCAACTTTGCACCACCATCTTCAAAACCACCAACTCCTCCATCATCAGGAAACAATAATAACAACAATAAGCATGGATTAAGCTTTGCTTCATTGAAGGCAAAGTTGAGCAAGAACTTGCAAAGCATCATGGCAAGGGCTAATCACAACAACAAGTCTTCATCATCAAAGAGTAGGGTGAGTGACCATTTCACCTTTGCTAGCATCTTCAACCGCCATAATAGGAACAATAATCATCCTCCTCCTCCAATGTTAGATGTCAAGAACATTGATCACAAAGTGGTGCAACCTAGCATCATAGTACCACCACACGTGGATCATCAAAATCAACATGACTACCCTAATAATAATAATAATAATTGGGAAAATTCAAGTGTGTCTGATTGTAGCACCGAGTGGATTATAAATCATGGGTTGTTCCAAAAACATAGGTTATTGTTGGACTCATCATCCTCAGCAGGCTCTGATAATGATGGTGAGTTTGGTGGTGTTTGTGATCAAGGGGTTTTGGATCAACTAATGGGTTGGGTTGATAACACTCAAATTAGTAGTGAAAATAATAATGATGATGAGGGTTTATCAAGGAGCAAGAGATTCAAGGTTGGTTCTTCTGTTCTTGTACCACCAAGTTTCTCTTCTGCTTCTTCTTCTCCTTATTATTATGATTGTGGTTCTCCATACACTGCTTGTGGATCTCCATATTATGCTTATGGTGGTTATGGCTCTCCCAATTACTATGGCTCTCCCTATAATAATAATAATAATAATAATAATAATAATAATAATAATTATAATGGTGGGAAGCCATGA 1125 0.3956 MAETEDKKHDPPPPTTTTDEEATVVVTADTNNKNIGHQQTNNKSSNNNMMRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDSPEEAARAYDEAARALRGDNARTNFAPPSSKPPTPPSSGNNNNNNKHGLSFASLKAKLSKNLQSIMARANHNNKSSSSKSRVSDHFTFASIFNRHNRNNNHPPPPMLDVKNIDHKVVQPSIIVPPHVDHQNQHDYPNNNNNNWENSSVSDCSTEWIINHGLFQKHRLLLDSSSSAGSDNDGEFGGVCDQGVLDQLMGWVDNTQISSENNNDDEGLSRSKRFKVGSSVLVPPSFSSASSSPYYYDCGSPYTACGSPYYAYGGYGSPNYYGSPYNNNNNNNNNNNNNYNGGKP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181688g00001 374 MobiDBLite consensus disorder prediction 16 49 - -
Stsc181688g00001 374 MobiDBLite consensus disorder prediction 1 15 - -
Stsc181688g00001 374 Gene3D AP2/ERF domain 51 110 IPR036955 GO:0003700|GO:0006355
Stsc181688g00001 374 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Stsc181688g00001 374 MobiDBLite consensus disorder prediction 1 49 - -
Stsc181688g00001 374 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 214 - -
Stsc181688g00001 374 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Stsc181688g00001 374 CDD AP2 52 109 IPR001471 GO:0003700|GO:0006355
Stsc181688g00001 374 FunFam ethylene-responsive transcription factor RAP2-11 51 110 - -
Stsc181688g00001 374 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Stsc181688g00001 374 SUPERFAMILY DNA-binding domain 53 109 IPR016177 GO:0003677
Stsc181688g00001 374 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Stsc181688g00001 374 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Stsc181688g00001 374 MobiDBLite consensus disorder prediction 103 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181688g00001 Stsc-Chr181688 1540 3123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181688g00001 38 109 AP2-EREBP Transcription Factor Family AT5G19790 65.278 7.46e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc181688g00001 AP2 6.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181688g00001 - K09286 adu:127746683 382.104