Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181684g00007 ATGCCGATTTCTAGAATTGCGATTGGAAATGCTTCAGAGTTTAGCCAAGCTGATGCACTTAAGGCTGCACTTGCAGAGTTCATCTCAATGCTTATCTTTGTCTTTGCTGGTGAAGGCTCTGGCATGGCTTATAACAAGTTAACAAACAATGGTGCAGCAACACCAGCTGGTGTTGTGGCGGCTTCTCTGTCCCATGCCTTTGCACTTTTTGTGGCAGTTTCCGTTGGTGCTAACATCTCCGGTGGCCATGTCAACCCTGCCGTCACATTCGGCGCCTTCGTCGGCGGCCACATTACCCTCCTCAGAAGCATTTTGTACTGGATTGCTCAGTTGCTTGGCTCCATTGTTGCTTGCTTGCTCCTTAAGTTTGCCACTGGTGGATTGGAAACATCTGCATTTGCACTTTCATCTGGGGTTGGAGCAGCAAATGCAGTGGTGTTTGAGATTGTGATGACTTTTGGATTGGTGTACACAGTTTATGCAACTGCAGTGGACCCAAAGAAGGGTGACATTGGAATAATTGCACCAATTGCAATTGGCTTCATTGTTGGTGCAAACATCTTGGCTGGTGGTGCCTTTGATGGTGCTTCCATGAACCCAGCTGTCTCATTTGGGCCTGCTGTTGTTAGCTGGACCTGGGCCAACCATTGGGTCTATTGGGTTGGCCCATTTGTTGGTGCAGGAATTGCTGCACTTGTCTATGAGCTTTTCTTCATCAACCAAAACACTCATGAACAGCTTCCAAACACAGATTATTAA 759 0.473 MPISRIAIGNASEFSQADALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGAATPAGVVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSIVACLLLKFATGGLETSAFALSSGVGAANAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWANHWVYWVGPFVGAGIAALVYELFFINQNTHEQLPNTDY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181684g00007 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Stsc181684g00007 252 SUPERFAMILY Aquaporin-like 16 244 IPR023271 -
Stsc181684g00007 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Stsc181684g00007 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181684g00007 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Stsc181684g00007 252 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Stsc181684g00007 252 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181684g00007 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181684g00007 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181684g00007 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181684g00007 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181684g00007 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181684g00007 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181684g00007 Stsc-Chr181684 34210 35582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181684g00007 1 252 Major Intrinsic Protein MIP AT4G01470 79.762 9.81e-145 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181684g00007 K09873 - gmx:547794 447.203