Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181683g00001 ATGAGTAATGCGAAAGAAAATGAGGAAGTTGGCCAGGGTGTGTCCTCGGCTATGGAAGATAACAAACAGTTAGTTGATGCCCAGCTTCAAATTCAACCTGATGTCTCTTCTACTCCTGTTCCAGTAGAGGAAAATTCAAACCACGTCCAAAACGGATCAAAGGAGCCACCTGCTGAGTCTAAGGTTGAGAATCCTGCTGAGTCTTTGGCAGAACCGCTTCCTATGGCAAAGGCAGAGCCACCTCCTGAGGTGAAGGCTGAGCAACCTCCTACAGCTACGTTGGAGCCACCTGCCGTGGCTAAGTCAGAGTTACCTTCTCAGGCTACAGTAGTACCACCTGCCCAATCTGAGGCAGAGCCTCCTTCTGAGGATAAGTCTGAGCAACCACCTGCTGAAGATGTGTCAGCAACAGATGCTGAGGACAAGGCTGAGCCACCAGTTGAGGACAAAAGTGTGAATCAAGAGGGGGTTCCTGAGGATATTCCAAAGCAAGATCAAAGTAGTGAAAATACTCTTCAGTCGGTCAAAGCTTCTGACCCGATGGAGGAAGATAGTGAATTTCCTCAGAGTAATAATGGTACGGAGGATGATGTGAATGTATGTCCAAATAATGCTGAAACGTCAGCAGAGGTGAAGTCTGAAGGTGGTGAAGTGGCTAATGCTAAAAGTTGCAACCATGTTGAATCCATACCATCTGGGCATGATGAGCCTTCTATGCTGCAAGCTGTTCCTGCTGATGCAAATGTTGAAATGAAGAATGTATCAGAAGTTGACAATAAGACTGACGAAAATCAAGCTATTGCAACTGCAGACAATGGGAATGAAAACTCAAGTCACATGCCTTTCCTGGACGCTGACCATTTTTATGATGGGAATGAGTCAGGGACAGAGGAAGAGCAATCAGCATTCATGAAGGAGCTTGAGAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAATTTTATGGAGAAGGACTTAATTGCCTTAAGTTATGGAGAGCTGTAACAAGATTGGGTGGTTATGACAAGGTAACCACATGTAAACTATGGCGGCAAGTGGGAGAATCTTTCAAACCTCCTAAGACATGCACCACAGTTTCATGGACTTTCCGTGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGACATAAGATAAAAGGTGGTGAGCTGAGTGTTCCAATTCCTTCACAACCAGAACCTATGAATATTGAAAATCAGTCTTCAGCTCCAGGTAGAGCACGTAGAGATGCTGCAGCACGTGCTATGCAGGGTTGGCACTCACAACGTCTACTAGGCAATGGTGAAGTTGGTGACCCCATTATTAAGGATAGGAACTCTGTGTCTATGCAGAAGCGTGAAAAACAGCAGCTTAAAAGCATCAATTTACTTAAACGCAAGAAACCATCGTATATGGACAATGCAGTCAAAGCTGCACGTAGTAAACCGGCTAAACCACAATTGGACACAGCTGTGATTGATATTGGACCACCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAGGATTGTTTCGAGGTATATGCTTTAGTTCCTGGCCTACTTCGAGAAGAGGTGCGTGTTCAATCAGACCCAGCAGGACGCTTAGTTATTAGTGGTGAGCCTGAGCATCCCAATAATCCTTGGGGTGTAACACCTTTCAAAAAGGTTGTAAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCAGTGGTGACTCTGCATGGACAGTTGTTTGTTCGTGTCCCATTTGAGCAATCAGAATAG 1779 0.448 MSNAKENEEVGQGVSSAMEDNKQLVDAQLQIQPDVSSTPVPVEENSNHVQNGSKEPPAESKVENPAESLAEPLPMAKAEPPPEVKAEQPPTATLEPPAVAKSELPSQATVVPPAQSEAEPPSEDKSEQPPAEDVSATDAEDKAEPPVEDKSVNQEGVPEDIPKQDQSSENTLQSVKASDPMEEDSEFPQSNNGTEDDVNVCPNNAETSAEVKSEGGEVANAKSCNHVESIPSGHDEPSMLQAVPADANVEMKNVSEVDNKTDENQAIATADNGNENSSHMPFLDADHFYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTTCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELSVPIPSQPEPMNIENQSSAPGRARRDAAARAMQGWHSQRLLGNGEVGDPIIKDRNSVSMQKREKQQLKSINLLKRKKPSYMDNAVKAARSKPAKPQLDTAVIDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181683g00001 592 CDD ACD_sHsps-like 507 587 - -
Stsc181683g00001 592 Pfam ARID/BRIGHT DNA binding domain 300 384 IPR001606 GO:0003677
Stsc181683g00001 592 FunFam AT-rich interactive domain-containing protein 3 297 396 - -
Stsc181683g00001 592 MobiDBLite consensus disorder prediction 1 54 - -
Stsc181683g00001 592 SUPERFAMILY HSP20-like chaperones 501 588 IPR008978 -
Stsc181683g00001 592 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 492 592 IPR002068 -
Stsc181683g00001 592 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 136 591 IPR045147 GO:0006357
Stsc181683g00001 592 ProSiteProfiles ARID domain profile. 297 388 IPR001606 GO:0003677
Stsc181683g00001 592 SMART bright_3 298 389 IPR001606 GO:0003677
Stsc181683g00001 592 MobiDBLite consensus disorder prediction 160 210 - -
Stsc181683g00001 592 MobiDBLite consensus disorder prediction 394 414 - -
Stsc181683g00001 592 MobiDBLite consensus disorder prediction 1 218 - -
Stsc181683g00001 592 Gene3D - 489 592 IPR008978 -
Stsc181683g00001 592 MobiDBLite consensus disorder prediction 120 156 - -
Stsc181683g00001 592 Pfam Hsp20/alpha crystallin family 509 591 IPR002068 -
Stsc181683g00001 592 SMART ARID_2 294 384 - -
Stsc181683g00001 592 SUPERFAMILY ARID-like 290 395 IPR036431 GO:0003677
Stsc181683g00001 592 CDD ARID 299 384 - -
Stsc181683g00001 592 Gene3D - 297 394 IPR036431 GO:0003677
Stsc181683g00001 592 FunFam AT-rich interactive domain-containing protein 3 484 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181683g00001 Stsc-Chr181683 11314 18015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181683g00001 292 590 ARID Transcription Factor Family AT1G76510 63.816 2.19e-128 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc181683g00001 HSP20 1.8e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181683g00001 - - lang:109348972 694.886