Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181682g00008 ATGGCCGCAAGTCTGCTTATCGGTGGCGCTGTGGGTGCCGGGATGCAGGAAGTGCTAGGACGGGCCATAGAAATGGTGGAGAAAGGTATGAATTTCAATTCAGAGTTAAAGAGCAGCACGGAGACCTTAGATACATTGATTCCTCTTGTTGAGCAAATGAAACAACTCGCCAGAGAGTCAGATCGCTCCATCGAAGCAGTAGCAAAGCTTGAGAATGAGATACAGAAAGGGAAAGAGCTGACGGAGAAGTGCTCCAAGTTTCGTTGGTGGCGGTTTCTGTCTTTCCCTGTGTACCATGACAGGATTCAAGAAAGGGACAAGAAGATCGGTAGGCATCTGTCCATGGGCGTGCAAGCGCAGATCGCGAGGGATTCGATGGAGACGCTGAAGAACGTGAGGAAGATTCTAGATATTCTCGGTGATGAGTATGGAAGAAGGTTGGTGTTGAGGGGTGTGAGTGGGGTTCCTGAGATGGCTGAGTTCACTGTGGGGTTGGATGAACCGTTGAGGAAGTTAAAGGATGAGGTGCTCAAGAAGGATGGTGATCGTGTTCTTTTGGTGACTGGGTTGGGAGGATCTGGCAAGAGTACGTTGGCTAAGAAGCTCTGTTGGGATCATGAAGTCAAAGCCATGTTTGTGGAGAATATCTTCTTCCTGACAGTCTCAAAAACACCCAACTTGAAGGCCATTGTGCAGACACTATTTGAACACTGTGAAGGCCGGGCACCAGAGTTTCCAACCGACGATGATGCAGTTAACCGGTTGGGGAACTTGCTGAGGCGTGTTAGGGAGTTAACCGGTAGGCCAATATTGTTGGTCCTGGATGATGTATGGTCTGGCACAGATGTAATTGTTGACAAGTTCAAATTCACCAGCATTCCAGATTACAAGATTGTAGTTACTTCAAGATTTGTATTTCCCAGATTTTCTACTCAGTTCCCCTTGAAACCACTTGAGAATCATGATGCATTATCCCTCTTCCATCACTTCACACAAGCTAAAGACAACACCAACTCATATAAGCCTGATGAAAATCTTGTCCAGGAGATAGTGAGAGGTTGTAATGGTTCACCTTTGGCTCTTGAAGTTATAGGTGGATCTCTGTGTCAGCATCCCTTCGAGTTCTGGCAAACAATGAAAGAACGGATTAAATCCAATAAGGACTTACTTTCTCACCTTCAGAATTGTCTTGATATTCTGGAGGACAACAAGGAGAAGGAGTGCTTCATGGACCTAGGTCTGTTCCCTGAAGATCAGAGAATCCGGGTTCCTATCTTGATTGACATGTGGACAGAACTTCATGAACTTGATGAGGATGGACAAAAAGCAATGAATATCATACATAGTTTAAACACCAAGAATTTGGCTAATGTCATTGTTAAAAGGAAAGTTGCAACGGATGTGGAAATGTACTACAATAACCACTTCCTTATGCAGCATGATCTCCTAAGAGAGCTAGCGAGCATTCAAAGCAACCAAGAACTAATCGAACAAAGGAAGAGACTGGCAATTGACTTGACTCAGAGTGGGAAAAATTGCCCCAACTGGTTGATAGGACAGAATCAGCCGGGTATCCTTTCTCGAATGCTGTCATTCTTATCCTTGAGGGGCACGCAACAGCAACAGGAGCAGAAACAGGTCTCTGCTCGCATAATGTTTATTTCAACCGATGAAACATTCACTGCAAACTGGTACGACATGAATCCGGCTGAAACCGAAGTTCTGATCTTAAATATCCATTCAAGCAAGTATACTTTTCCAGACATCATTCAGAAAATGAGTAAACTCAAAGTTCTTATAGTCACAAATCAGGGCTTCCATCCTTGTGAATTGAACAACTTTGAGCTACTTGTTTCTTTACCATGCTTGAAAAGGATTAGATTGGAGAAGGTTTCGGTTCCCTGCCTCTGCAAATTGAGGAATCTGCGAAATCTATCGCTTTACATGTGTACTACAAAGCATGCTTTTGGAAGTAGTGACATCAAAATTTCAGAAGCACTGCCAAATTTAGCAGAGTTGAACATTGACTATTGCAAGGATCTAGTGGAATTGCCTTCCGATTTCTGTAACATAACGACCATGAAGAAGCTTAGTATCACTAACTGTCACAATCTTTGTAAACTACCACAAGAAATAGTTATGCTGCAGAATCTTGAAGTTTTGAGACTTAGTTCCTGCTCTCACTTGGAAGAGATGCCAGAATCTGTTGGAAGGCTTGAACAAATTTGGTGTCTCGACATATCAGACTGTACAAGCCTAACCCAGTTACCGGCCAACATCGGCGAGTTGCCGAGTCTACAGAAGATCTACATGTGGGGTTGCTCAGGATTGAATGAATTGCCACACTCTGTTACATACTTCCAAGATTTGAAGCATGTGATTCATGTGATCTGCGACGATGAGGGGGCTGCTTTGTGGGAACATTTCACACATTTTGTCAGCCTTCCTAACTTGAAGATAGTGAAAGTTAGAGCAGATATCAACCTACGTTGGCTTCGTGGATTTCAGTGA 2511 0.4377 MAASLLIGGAVGAGMQEVLGRAIEMVEKGMNFNSELKSSTETLDTLIPLVEQMKQLARESDRSIEAVAKLENEIQKGKELTEKCSKFRWWRFLSFPVYHDRIQERDKKIGRHLSMGVQAQIARDSMETLKNVRKILDILGDEYGRRLVLRGVSGVPEMAEFTVGLDEPLRKLKDEVLKKDGDRVLLVTGLGGSGKSTLAKKLCWDHEVKAMFVENIFFLTVSKTPNLKAIVQTLFEHCEGRAPEFPTDDDAVNRLGNLLRRVRELTGRPILLVLDDVWSGTDVIVDKFKFTSIPDYKIVVTSRFVFPRFSTQFPLKPLENHDALSLFHHFTQAKDNTNSYKPDENLVQEIVRGCNGSPLALEVIGGSLCQHPFEFWQTMKERIKSNKDLLSHLQNCLDILEDNKEKECFMDLGLFPEDQRIRVPILIDMWTELHELDEDGQKAMNIIHSLNTKNLANVIVKRKVATDVEMYYNNHFLMQHDLLRELASIQSNQELIEQRKRLAIDLTQSGKNCPNWLIGQNQPGILSRMLSFLSLRGTQQQQEQKQVSARIMFISTDETFTANWYDMNPAETEVLILNIHSSKYTFPDIIQKMSKLKVLIVTNQGFHPCELNNFELLVSLPCLKRIRLEKVSVPCLCKLRNLRNLSLYMCTTKHAFGSSDIKISEALPNLAELNIDYCKDLVELPSDFCNITTMKKLSITNCHNLCKLPQEIVMLQNLEVLRLSSCSHLEEMPESVGRLEQIWCLDISDCTSLTQLPANIGELPSLQKIYMWGCSGLNELPHSVTYFQDLKHVIHVICDDEGAALWEHFTHFVSLPNLKIVKVRADINLRWLRGFQ 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181682g00008 836 PRINTS Disease resistance protein signature 354 368 - -
Stsc181682g00008 836 PRINTS Disease resistance protein signature 713 729 - -
Stsc181682g00008 836 PRINTS Disease resistance protein signature 264 278 - -
Stsc181682g00008 836 PRINTS Disease resistance protein signature 184 199 - -
Stsc181682g00008 836 Pfam NB-ARC domain 167 386 IPR002182 GO:0043531
Stsc181682g00008 836 Gene3D - 397 487 IPR036388 -
Stsc181682g00008 836 Coils Coil 53 73 - -
Stsc181682g00008 836 Gene3D - 318 396 IPR042197 -
Stsc181682g00008 836 ProSiteProfiles RPW8 domain profile. 1 151 IPR008808 -
Stsc181682g00008 836 Gene3D Ribonuclease Inhibitor 531 798 IPR032675 -
Stsc181682g00008 836 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 4 132 IPR008808 -
Stsc181682g00008 836 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 1 832 IPR039203 GO:0050832
Stsc181682g00008 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 412 IPR027417 -
Stsc181682g00008 836 SMART AAA_5 181 319 IPR003593 GO:0016887
Stsc181682g00008 836 Gene3D - 149 309 IPR027417 -
Stsc181682g00008 836 SUPERFAMILY RNI-like 582 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181682g00008 Stsc-Chr181682 35432 40395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181682g00008 270 784 WRKY Transcription Factor Family AT4G12020 22.263 4.31e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181682g00008 - - gmx:100792590 903.664