Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181682g00007 ATGGATCGGGCGGCGGTCACCGTCGGACCCGGCATGGACATGCCGATCATGCACGACAGCGACCGTTACGATCTGGTCCGTGACATCGGCTCCGGAAACTTCGGCGTCGCAAGATTGATGCAAGATAAGCAAACCAAGGAGCTCGTTGCCGTTAAGTACATCGAACGTGGCGACAAGATTGATGAAAATGTCAAGAGAGAAATCATCAATCACAGGTCTTTGAGACACCCTAACATTGTTAGGTTTAAGGAGGTTATTCTAACACCTACTCATCTAGCCATTGTAATGGAATATGCATCTGGAGGAGAGCTGTTTGAGAGAATCTGCAATGCCGGGCGTTTCTCTGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGCCACGCAATGCAAGTATGTCACCGGGACCTGAAGTTGGAGAACACTTTGTTGGATGGAAGCCCAGCACCTCGTTTGAAGATATGCGATTTTGGCTACTCCAAGTCTTCAGTGCTTCACTCACAACCAAAGTCAACAGTTGGTACTCCAGCATATATAGCTCCAGAAGTATTGCTGAAACAAGAATATGATGGCAAGATTGCAGACGTCTGGTCATGTGGAGTAACTTTATATGTGATGCTAGTGGGAGCATATCCTTTTGAAGATCCTAATGAGCCAAAGGATTTCAGGAAGACAATTCAGAGAATCCTCAGTGTCCAGTATTCCATTCCAGACTTTGTTCAGATATCTCCTGAATGTCGCCGCCTTATCTCAAGGATCTTTGTTTTTGACCCAGCAGAGAGAATCACGATGTCTGAGATCTGGAACCATGAATGGTTTCTGAAGAATCTCCCAGCAGATCTGATGGATGAGAAGATAATGGGCAATCAATTTGAAGAGCCAGACCAACCGATGCAGAGCATCGATACGATCATGCAGATAATCTCAGAAGCTACCATACCAGCAGCTGGGGCCTATTCCTTAGACCAGTTTATGGCAGATAACATCGATATGGATGATGACATCGACGAATTAGAATCCGAATCCGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCCATATAA 1089 0.4573 MDRAAVTVGPGMDMPIMHDSDRYDLVRDIGSGNFGVARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGAYPFEDPNEPKDFRKTIQRILSVQYSIPDFVQISPECRRLISRIFVFDPAERITMSEIWNHEWFLKNLPADLMDEKIMGNQFEEPDQPMQSIDTIMQIISEATIPAAGAYSLDQFMADNIDMDDDIDELESESELDIDSSGEIVYAI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181682g00007 362 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181682g00007 362 Coils Coil 327 347 - -
Stsc181682g00007 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Stsc181682g00007 362 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181682g00007 362 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Stsc181682g00007 362 PANTHER SERINE/THREONINE KINASE 22 305 - -
Stsc181682g00007 362 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181682g00007 362 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Stsc181682g00007 362 SUPERFAMILY Protein kinase-like (PK-like) 16 314 IPR011009 -
Stsc181682g00007 362 FunFam Serine/threonine-protein kinase SRK2E 99 287 - -
Stsc181682g00007 362 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
Stsc181682g00007 362 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181682g00007 Stsc-Chr181682 28320 34963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181682g00007 22 289 CBL-interacting serine-threonine protein kinases AT4G24400 43.682 5.33e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Stsc181682g00007 Pkinase 1.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181682g00007 K14498 - gmx:100806949 674.085