Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181682g00004 ATGTCGTCGACGAATTCACCATGCGCGGCGTGCAAGTTCCTCCGCCGGAAGTGCACACAAGAGTGCATTTTCGCGCCGTACTTCCCACCGGACAACCCGCAGCGCTTCGCCTACGTCCATCGCGTCTTCGGCGCCAGCAACATCGGCAAGATCCTCAACGAGCTAGCCGCCTCGCAACGGGAGGACGCGGTGAAGTCCCTTGCGTTCGAGGCGGAGGCGCGCCTCCGTGACCCGGTCTACGGCTGCGTCGGCGAGATCGCCGTGCTCCAGCAGCGCCTCCGCCAGGCACATACGGAGCTCCTCAACGCCAAGAACGAACTCAGCGCCTTCGTCAACCCACAAGCCTTGCAAGGTGCATTGATTTCGCCTCACGGAATTCGAGGAGTCCCCCTTTACCCTCAGGCAAAGCCTTTGTCTCCGACTCTCTTTGCAGCTCCCTACGGCCAGAACACTGTGCCAGCTGTACAGCATTCTGTACCGTTGGGTGCTGCTGGTGACCTGGACCCGGAGCAGCAGGAGTTATTGGAGGCCCAACAACTCGCTGCTGCCGCGGCGATCCGGGAACAGCAGCATCATGCTATGATGATGAGGAATTTTGAACTGCAACAGCAACAGGAGTATCTAAGATATAATGCTGCTGCTATTGGACTTGAACCTGCTGCCGTGGCTGCGAGTCCAGCTTCAATTGTGACGGCTGAAGGTGGCGGCAGCGGCGGTAGTGGAAGTGGAGTGTTTGGACAGATGGGTGGTCAGGCAGGTGAGATGGCACCTTGTTTGGCTTTGGGGACATTTGACAGTTCTGGAACTTATAATCAGCATCAGCATCATCATCAGATGCAACAACAAGCACAACAACATGGAGTTGGGGAAAATTATGTTGGTCTTGCAACTCATCATCATCATCATCATTACCCTGTTGAGGCGCAGTTTCTGCTATCATCGGAGCAGCAAGCACAGTTGTCCCAACAACAACAACCGTCAGAGACTTATTATGAAAGGTTGATGAGAGAGCGTGAACTTGAGGAAGCTTCTTATCGGTCATGGATGAATCGGAAAACTCAACACCTCAGGTAG 1074 0.5484 MSSTNSPCAACKFLRRKCTQECIFAPYFPPDNPQRFAYVHRVFGASNIGKILNELAASQREDAVKSLAFEAEARLRDPVYGCVGEIAVLQQRLRQAHTELLNAKNELSAFVNPQALQGALISPHGIRGVPLYPQAKPLSPTLFAAPYGQNTVPAVQHSVPLGAAGDLDPEQQELLEAQQLAAAAAIREQQHHAMMMRNFELQQQQEYLRYNAAAIGLEPAAVAASPASIVTAEGGGSGGSGSGVFGQMGGQAGEMAPCLALGTFDSSGTYNQHQHHHQMQQQAQQHGVGENYVGLATHHHHHHYPVEAQFLLSSEQQAQLSQQQQPSETYYERLMRERELEEASYRSWMNRKTQHLR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181682g00004 357 Coils Coil 86 106 - -
Stsc181682g00004 357 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Stsc181682g00004 357 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 301 - -
Stsc181682g00004 357 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181682g00004 Stsc-Chr181682 18902 20178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181682g00004 1 248 AS2 family AT5G66870 45.283 8.80e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc181682g00004 LOB 5.4e-39 No_clan