Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181682g00002 ATGCGGTGGATGCACATTTCGTTTTCCAAAGACAAAGACAGAGAAAACAATTACACTTCCGCCTCCTCCTCCGCTTCTTCTTCTTCTTCTTCCGCCGCCGTCGAAAGCCACAAGAAAGCATGGCGGTTCCGAAGCCGGCACAAGAAGAATGCAAGCACCGGCGGAAAGTCTCCTCACGGTGGTTATAATAATAAGCATATTGACGTGGAAGAGGACGCCGCCGCCGTGGCGATCTCGGTGAACTCCCCTCCCGGAATTCGCACCACATCCATCTCCTCCTCTGCGTCGGCATCTTCTTTCTCCTCATTGTCTGCGAAGCCGTTACCGTTGCCGTTGCCGCAGCGAGATGCAGAATTTCGGCAACCGTCCCCTGTGGGAACTTACAGCAGTGCTAGCTTCAATGGCTATCGATCAATGGAGGATCGCGATCGAACTGATGCTGCTCCCGATGTCAACCTTTCATTTTCCGCGGGGTTCAAAATGAGGAGTGTTTTCGCTAGCAACCGAGACACAACACGAAAGGCTGAGCAGCTGGATAATCGGTCACCAAGATCTGAAAACTATGGTGTAAGCCACTCAGGCAAGAGTTCTTCGAATAGTCCCTTTGCAAGTCCCAAGATCAGTCCACGTCGCGCAAGCACAGATGATTTCATTCCATATCATTATGTAGCTCCAAAAGGAAACCAATTCTGGTCTGCACCCGAGATATCTTCTTCAGAAACATCCCTGCATCCAGTCTTTGATTTATCAACATCAGGCACCGATACCTCGCCGCGTCTAAGTCCACATGGAAGAGCTCAACTACTCCTTTTTAAGTGCGCAAGTGGACCTCCATCACCCTTACACACCAGCTTGATGAATGAGACTACACCAGCACGCCGAGCCGAAGGTAATTCTGTCAGTGTCCACCGTTTACCCCTGCCTCCCATGCCCAACTTACTTTCCCCAACTGCTGGAACTGGTTACTCCCAGGCTGCGGTGAAATCAGAATCGTTGCCAATGAAAAGCCAATGGAAGAAGGGGAAACTTATTGGCCGCGGCACATTTGGAAGTGTTTATGTTGGCACCAATAGAGAAACTGGAGCGTTGTGCGCGGTGAAAGAAGTAGAATTATGTCATGAGGATCCAACTTCCATAGAGTCTATAAAGCAGTTAGAGCAGGAAATTAAAGTTCTTAGCCAACTGAAACATTCAAATATTGTGCAGTACTATGGTAGTGAAGTAGTCGGAGACAAGTTCAATATTTATCTGGAATATGTCCATCCTGGTTCTGTTACTAAATATGTCCGCGACCATTGTGGTGCCATAACAGAACCGGTCATTAGGAATTTTACGCGCCATATTCTTTCAGGGTTGGCATACTTGCATAGCAAGAAAACAATTCATAGGGACATTAAAGGGGCTAATTTGCTTGTCGATTCGGCAGGAGTCGTCAAACTTGCTGATTTTGGAATGGCCAAGCATCTTACTGGATGTGAAGCTAATCTCTCTTTGAAGGGAAGTCCATATTGGATGGCTCCAGAGCTTATGCAGACTGTTGTACAAAAGGATAACAACTCGGATCTAGCTTACGCTATAGATATTTGGAGCCTCGGTTGTACAATCATTGAAATGTTCAACGGGAAACCTCCGTGGAGCGAGTACGAAGGAGCTGCAGCAATGTTTAAGGTTATGAGTGATACCCCGCCTATACCGGAAACATTGTCATCTGACGGCAAAGATTTCCTGAGGTGCTGCTTTAAAAGAAATCCGGCGGAGAGACCAACTGCTGCAATGTTACTCGAACATCGATTTTTGAAGAACTCACAACTGCTGGATGTTGTGCCTTCCACTCAGTTGTACAATGGAACAACAATCATGGATAAAACTCTTAGCCCTCATAATCCCACAGGGAATCTAGAAAATAAACCTGATCAGATGCCTATCTCGGGCGAGAAGATTGTGAATGGGAAAGCTGCAGAGAGGCGAGGAGTTCTTATTCCTTCCTTGGATATCTTGCCTGCGCACCAAAGACGATGA 2019 0.4715 MRWMHISFSKDKDRENNYTSASSSASSSSSSAAVESHKKAWRFRSRHKKNASTGGKSPHGGYNNKHIDVEEDAAAVAISVNSPPGIRTTSISSSASASSFSSLSAKPLPLPLPQRDAEFRQPSPVGTYSSASFNGYRSMEDRDRTDAAPDVNLSFSAGFKMRSVFASNRDTTRKAEQLDNRSPRSENYGVSHSGKSSSNSPFASPKISPRRASTDDFIPYHYVAPKGNQFWSAPEISSSETSLHPVFDLSTSGTDTSPRLSPHGRAQLLLFKCASGPPSPLHTSLMNETTPARRAEGNSVSVHRLPLPPMPNLLSPTAGTGYSQAAVKSESLPMKSQWKKGKLIGRGTFGSVYVGTNRETGALCAVKEVELCHEDPTSIESIKQLEQEIKVLSQLKHSNIVQYYGSEVVGDKFNIYLEYVHPGSVTKYVRDHCGAITEPVIRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGCEANLSLKGSPYWMAPELMQTVVQKDNNSDLAYAIDIWSLGCTIIEMFNGKPPWSEYEGAAAMFKVMSDTPPIPETLSSDGKDFLRCCFKRNPAERPTAAMLLEHRFLKNSQLLDVVPSTQLYNGTTIMDKTLSPHNPTGNLENKPDQMPISGEKIVNGKAAERRGVLIPSLDILPAHQRR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181682g00002 672 Gene3D Transferase(Phosphotransferase) domain 1 334 627 - -
Stsc181682g00002 672 Pfam Protein kinase domain 339 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181682g00002 672 MobiDBLite consensus disorder prediction 81 133 - -
Stsc181682g00002 672 FunFam Mitogen-activated protein kinase kinase kinase 5 335 636 - -
Stsc181682g00002 672 MobiDBLite consensus disorder prediction 168 210 - -
Stsc181682g00002 672 MobiDBLite consensus disorder prediction 1 66 - -
Stsc181682g00002 672 ProSitePatterns Protein kinases ATP-binding region signature. 344 367 IPR017441 GO:0005524
Stsc181682g00002 672 SMART serkin_6 338 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181682g00002 672 MobiDBLite consensus disorder prediction 18 35 - -
Stsc181682g00002 672 SUPERFAMILY Protein kinase-like (PK-like) 332 628 IPR011009 -
Stsc181682g00002 672 MobiDBLite consensus disorder prediction 621 642 - -
Stsc181682g00002 672 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 20 604 - -
Stsc181682g00002 672 MobiDBLite consensus disorder prediction 621 637 - -
Stsc181682g00002 672 MobiDBLite consensus disorder prediction 1 17 - -
Stsc181682g00002 672 MobiDBLite consensus disorder prediction 182 207 - -
Stsc181682g00002 672 MobiDBLite consensus disorder prediction 82 105 - -
Stsc181682g00002 672 ProSiteProfiles Protein kinase domain profile. 338 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181682g00002 Stsc-Chr181682 8074 12536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181682g00002 137 637 MAP Kinase Kinase Kinase AT5G66850 57.439 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc181682g00002 Pkinase 9.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181682g00002 - - gmx:100790701 698.738