Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181679g00002 ATGGCTTCAACCTCTCCTTCTCCAAATGCTTCACCTTCTGCAATTCCTCCAGAATCTTCTGCTAATCCACCACCACCATCGCCATCATCTCCATCACCACCATCACCACCATCATCTCCATCTTCTCCATCTTCTCCTTCTAAGCCAAATCAGACCTCTGATAGCCCTGCTCCTTCATCTCCTTTTACCCCTTCTTCAGCTTCACCTCCTTCAGTTCCTGCAACACCTCCTACCCCATCCCTTTCACCTCCACCATCATCTACTACACCTCCACCAAATCCATCCCCTCCTGCACCACCAGATTCTCCACCACCCTCACTACCAGCATCGCCTCCACCTTCAGTTGCAACCACACCACCACCACCATCTGCCACTGCTGCCCCTCCTCCTGCCAATACTTCGCCTTCGGTTCCAAGTTCATCCCCACCACCTCCCACAGCCAGTTCCCCTCCTCCTCAATCCTCACAAGCGCCTCCTAAATCAATTCCACCTCCTTCTCAACCAGTTTCACCATCTCCTCCACCTCCAGCCAATGTGCCAAGGCCAACACCATCCGCCTCTTCTCCGCCGAAGGGAAAGCCACCAGAAAGCTCCCCTTCGCCTCCTTCACAACATGCTTCCCCTCCGTCTGTTTCTAAACCTGCTCCTTCCACTGATGTTCCCCCTCCATCAACATTGCCATCTACTCCTCCTGCACCTCCTTCCAAAGATGTCCCCCCTCCATCCACATTGCCATCAACTCCTCCTTCAGTGCCTTCGGCATCTTCTCCATCATCTTCGCCTCGTCAACCTGATAATAGAACAGCAACTGAGGCTCCAGCTGAGTCCTTACCCTCTTTTCCTACTGAGAAACCCACTGCTAAACCAACTAATGATGGAACCAATAGTATAACCTCGAATACACCATCTTCACACTCAAAAGGGTTAGGTTCTGGAGGAGCTGTGGCTATTGGCATTATAGCTGGCTTTTTTGTTCTCAGCCTTGTTGTTATGGCTGTGTGGTTTTCAAGGAAAAGGAAGAAGGGAACGGGACCAAAAGCTGGTTATACTTTGCCTTCGCCTTTTCCCTCATCTCACAATTCAGGTACTTTATTCTTGAGGCCACAATCACCAGCCAACTACTTAGGTAGTGGTTCTGGTAGTGATTTTGTGTATTCACCATCAGAGCCAGGTGGTATGAGTGGTTCGAGATCATGGTTCACATACGAAGAGCTTATCCAAGCTACAGATGGTTTTTCACCGAAAAATCTACTGGGAGAAGGTGGATTTGGTGCTGTCTACAAAGGTATTCTCTTTGATGGAAGAGTAGTGGCTGTGAAACAGCTTAAAATTGGTGGTGGGCAAGGGGAACGCGAATTTAGAGCAGAAGTTGAGACTATTAGCCGTGTACATCATCGCCATCTTGTTTCCCTGGTGGGATATTGTATATCTGAGCATCAAAGATTGCTTGTCTATGACTATGTTGCTAATGACACACTTCATTACCATCTTCACGGTGACAACAGACCAGTTTTGGATTGGCCTACCAGAGTCAAGGTTGGTGCCGGGGCTGCTCGAGGAATAGCTTATCTACATGAAGACTGCCATCCACGCATTATTCATCGTGATATTAAGTCATCGAACATCCTGCTTGACAATAACTTTGAAGCTCAAGTTTCAGACTTTGGGCTTGCAAAATTAGCACTGGATTCAAATACACACGTTACTACCCGCGTGATGGGAACCTTTGGGTACATGGCACCAGAGTATGCAACAAGTGGAAAATTGACTGAAAAGTCCGATGTATATTCCTTCGGTGTAGTGCTTTTGGAGCTAATTACTGGTCGAAAGCCTGTCGATGTCTCTCAGCCGATTGGTGACGAGAGCCTGGTTGAATGGGCTCGACCTCTGTTGATCGAAGCACTTGACAACGAGGACCTCGATATTTTGGTGGATCCAAGACTGGAAAAGAACTACAATAGAAATGAAATGTTCCGGATGATTGAGGCTGCTTCAGCCTGTGTTCGTCACTCGGCAATAAAGAGGCCACGGATGAGTCAGGTGGTAAGAGCTTTAGATTCCTTAGACGAATTTACTGATCTCAACAACGGAATGAGACCGGGGCAGAGTTCGGTCTTCGATTCTGGGCAACAATCTGCACAGATCAGAATGTTTAGAAGGATGGCTTTTGGTAGCCAAGATTACAATTCCAGTTTCTTTAATGAGTCTCAAAGTAGCTGGATGAGTAGAGAGCAACACGATTCAACAACCATGAATAGATCCGGACCTAGGAATATTTGA 2280 0.4763 MASTSPSPNASPSAIPPESSANPPPPSPSSPSPPSPPSSPSSPSSPSKPNQTSDSPAPSSPFTPSSASPPSVPATPPTPSLSPPPSSTTPPPNPSPPAPPDSPPPSLPASPPPSVATTPPPPSATAAPPPANTSPSVPSSSPPPPTASSPPPQSSQAPPKSIPPPSQPVSPSPPPPANVPRPTPSASSPPKGKPPESSPSPPSQHASPPSVSKPAPSTDVPPPSTLPSTPPAPPSKDVPPPSTLPSTPPSVPSASSPSSSPRQPDNRTATEAPAESLPSFPTEKPTAKPTNDGTNSITSNTPSSHSKGLGSGGAVAIGIIAGFFVLSLVVMAVWFSRKRKKGTGPKAGYTLPSPFPSSHNSGTLFLRPQSPANYLGSGSGSDFVYSPSEPGGMSGSRSWFTYEELIQATDGFSPKNLLGEGGFGAVYKGILFDGRVVAVKQLKIGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYDYVANDTLHYHLHGDNRPVLDWPTRVKVGAGAARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEAQVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDVSQPIGDESLVEWARPLLIEALDNEDLDILVDPRLEKNYNRNEMFRMIEAASACVRHSAIKRPRMSQVVRALDSLDEFTDLNNGMRPGQSSVFDSGQQSAQIRMFRRMAFGSQDYNSSFFNESQSSWMSREQHDSTTMNRSGPRNI 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181679g00002 759 Pfam Protein tyrosine and serine/threonine kinase 416 685 IPR001245 GO:0004672|GO:0006468
Stsc181679g00002 759 ProSiteProfiles Protein kinase domain profile. 412 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181679g00002 759 SUPERFAMILY Protein kinase-like (PK-like) 390 685 IPR011009 -
Stsc181679g00002 759 MobiDBLite consensus disorder prediction 1 309 - -
Stsc181679g00002 759 FunFam Proline-rich receptor-like protein kinase PERK8 385 487 - -
Stsc181679g00002 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Stsc181679g00002 759 MobiDBLite consensus disorder prediction 62 255 - -
Stsc181679g00002 759 MobiDBLite consensus disorder prediction 737 759 - -
Stsc181679g00002 759 Gene3D Phosphorylase Kinase; domain 1 390 487 - -
Stsc181679g00002 759 MobiDBLite consensus disorder prediction 45 61 - -
Stsc181679g00002 759 ProSitePatterns Protein kinases ATP-binding region signature. 418 440 IPR017441 GO:0005524
Stsc181679g00002 759 MobiDBLite consensus disorder prediction 283 308 - -
Stsc181679g00002 759 MobiDBLite consensus disorder prediction 256 275 - -
Stsc181679g00002 759 Gene3D Transferase(Phosphotransferase) domain 1 488 700 - -
Stsc181679g00002 759 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 324 734 IPR047117 -
Stsc181679g00002 759 MobiDBLite consensus disorder prediction 10 44 - -
Stsc181679g00002 759 FunFam proline-rich receptor-like protein kinase PERK8 488 700 - -
Stsc181679g00002 759 SMART serkin_6 412 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181679g00002 Stsc-Chr181679 17370 22018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181679g00002 308 727 Trihelix Transcription Factor Family AT1G70460 57.366 1.06e-179 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc181679g00002 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181679g00002 - - gmx:100784873 843.958