Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181677g00008 ATGGCTTCTGCTTCTTCCAACGGTCTTGAATCCCCCAACACGCTCCAATCCATATGTTATAACCGTGGTTCCCTTCAGCTTCTCGATCAGAGGAAGCTACCTCTGGAAACAACTTTTTTGGACATAAAGGATTCTACTGATGGCTGGAATGCCATACGGGATATGGTGGTCCGGGGAGCACCTGCTATTGCCATTGCAGCAGCACTCTCACTGGCTGTTGAGGTCTCTAATTTAGGTTCTTTTAATGGGTTACCTGATGCTGCTGCTTCCTTGCTGCAAAGCAAGTTAGAATATCTTGTCTCAAGTCGGCCAACTGCAGTAAACTTATCAGATGCTGCAACAAAGCTAAAAGAAGTCATATCTAAGGCTGCTGGTACCAGTTCAGATGCCAGGAGTGTTTTCCAGGCATATATAGAAGCAGCTGAAATTATGCTTGAGGATGATGTTGCCTCGAACAAAGCAATTGGTTCATATGGAGCAAAGTTCATGCAACAGCAAACGGAGAAACAGAAACTTTCTGTCTTGACCCATTGCAACACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTCTGGGTGTAATTCGCGCGCTTCACAGTGGAGGAGTTTTAGAAAGGGCTTATTGCACTGAAACTCGGCCATTTAATCAAGGATCTAGACTTACTGCCTATGAGTTAGTGCATGATAAAATACCAGCTACTCTTATAGCAGATTCTGCTGCTGCCGCCTTAATGAAAGCGGGACACGTGGATGCTGTTGTTGTTGGGGCTGACCGTGTCGCATCAAATGGTGACACAGCCAACAAAATCGGGACCTATAGCGTTGCCTTATGCGCCAAGTTTCATAACGTACCTTTTTATGTGGCCGCACCGGTGACTTCAATCGATCTGTCACTTTCTTCTGGAGAAGAAATTGTCATCGAGGAGAGATCTCCGGAGGAGTTGTTGAACACGCGAGGAGGACTTGGAGAGCAAGTTGCTGCTTCTGGAATTTCAGTATGGAATCCGGCTTTCGATGTTACACCTGCTAGTCTAATACATGGAATCATAACTGAGAAGGGTGTAATTACAAAGACATCTTCGGGTGATGCTTTTGACATAAAAGCATTCATACAGAAAACAGGTTAG 1128 0.4539 MASASSNGLESPNTLQSICYNRGSLQLLDQRKLPLETTFLDIKDSTDGWNAIRDMVVRGAPAIAIAAALSLAVEVSNLGSFNGLPDAAASLLQSKLEYLVSSRPTAVNLSDAATKLKEVISKAAGTSSDARSVFQAYIEAAEIMLEDDVASNKAIGSYGAKFMQQQTEKQKLSVLTHCNTGSLATAGYGTALGVIRALHSGGVLERAYCTETRPFNQGSRLTAYELVHDKIPATLIADSAAAALMKAGHVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPVTSIDLSLSSGEEIVIEERSPEELLNTRGGLGEQVAASGISVWNPAFDVTPASLIHGIITEKGVITKTSSGDAFDIKAFIQKTG 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181677g00008 375 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 15 367 IPR005251 -
Stsc181677g00008 375 FunFam Methylthioribose-1-phosphate isomerase 13 204 - -
Stsc181677g00008 375 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 13 372 - -
Stsc181677g00008 375 FunFam Methylthioribose-1-phosphate isomerase 170 368 - -
Stsc181677g00008 375 Pfam Initiation factor 2 subunit family 57 357 IPR000649 GO:0044237
Stsc181677g00008 375 SUPERFAMILY NagB/RpiA/CoA transferase-like 13 360 IPR037171 -
Stsc181677g00008 375 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 16 358 IPR005251 -
Stsc181677g00008 375 Gene3D - 13 170 IPR027363 -
Stsc181677g00008 375 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 43 358 IPR011559 GO:0044249
Stsc181677g00008 375 Gene3D - 171 367 IPR042529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181677g00008 Stsc-Chr181677 36684 41440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181677g00008 54 373 Eukaryotic Initiation Factors Gene Family AT2G05830 75.701 9.76e-168 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181677g00008 K08963 - gmx:100799311 571.237